Hb_001519_040

Information

Type -
Description -
Location Contig1519: 25825-26316
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08390g
description POPTRDRAFT_767766; hypothetical protein
nr
ID XP_012074560.1
description PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09909 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12932: 25575-26724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001519_040 0.0 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
2 Hb_006588_160 0.0972740274 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_026234_010 0.0979556363 - - choline monooxygenase, putative [Ricinus communis]
4 Hb_000154_050 0.1046345359 - - CMP-sialic acid transporter, putative [Ricinus communis]
5 Hb_016448_010 0.1139178441 - - Protein MYG1, putative [Ricinus communis]
6 Hb_000098_240 0.1151758702 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
7 Hb_001824_030 0.1195081035 - - plant sec1, putative [Ricinus communis]
8 Hb_004032_160 0.1220724374 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
9 Hb_000186_300 0.1248002834 - - PREDICTED: malonyl-CoA decarboxylase, mitochondrial [Jatropha curcas]
10 Hb_005064_010 0.1248607636 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
11 Hb_004013_030 0.1249744955 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
12 Hb_004116_160 0.127001974 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
13 Hb_000001_090 0.1270670395 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
14 Hb_164010_050 0.1284414743 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
15 Hb_003506_030 0.1287348484 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_001623_490 0.129437791 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
17 Hb_006326_050 0.1306283037 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
18 Hb_002871_140 0.1321223852 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
19 Hb_054865_020 0.1321680759 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
20 Hb_033642_040 0.1323399427 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001519_040 Hb_001519_040 Hb_006588_160 Hb_006588_160 Hb_001519_040--Hb_006588_160 Hb_026234_010 Hb_026234_010 Hb_001519_040--Hb_026234_010 Hb_000154_050 Hb_000154_050 Hb_001519_040--Hb_000154_050 Hb_016448_010 Hb_016448_010 Hb_001519_040--Hb_016448_010 Hb_000098_240 Hb_000098_240 Hb_001519_040--Hb_000098_240 Hb_001824_030 Hb_001824_030 Hb_001519_040--Hb_001824_030 Hb_006588_160--Hb_000154_050 Hb_004013_030 Hb_004013_030 Hb_006588_160--Hb_004013_030 Hb_000001_090 Hb_000001_090 Hb_006588_160--Hb_000001_090 Hb_001053_080 Hb_001053_080 Hb_006588_160--Hb_001053_080 Hb_002837_040 Hb_002837_040 Hb_006588_160--Hb_002837_040 Hb_001450_020 Hb_001450_020 Hb_006588_160--Hb_001450_020 Hb_008387_010 Hb_008387_010 Hb_026234_010--Hb_008387_010 Hb_026234_010--Hb_016448_010 Hb_026234_010--Hb_000098_240 Hb_003506_030 Hb_003506_030 Hb_026234_010--Hb_003506_030 Hb_007413_040 Hb_007413_040 Hb_026234_010--Hb_007413_040 Hb_005064_010 Hb_005064_010 Hb_000154_050--Hb_005064_010 Hb_000154_050--Hb_004013_030 Hb_000154_050--Hb_002837_040 Hb_002871_140 Hb_002871_140 Hb_000154_050--Hb_002871_140 Hb_000261_210 Hb_000261_210 Hb_000154_050--Hb_000261_210 Hb_016448_010--Hb_003506_030 Hb_021596_020 Hb_021596_020 Hb_016448_010--Hb_021596_020 Hb_012438_030 Hb_012438_030 Hb_016448_010--Hb_012438_030 Hb_001504_010 Hb_001504_010 Hb_016448_010--Hb_001504_010 Hb_016448_010--Hb_000098_240 Hb_033642_040 Hb_033642_040 Hb_000098_240--Hb_033642_040 Hb_000878_160 Hb_000878_160 Hb_000098_240--Hb_000878_160 Hb_001158_160 Hb_001158_160 Hb_000098_240--Hb_001158_160 Hb_000820_150 Hb_000820_150 Hb_000098_240--Hb_000820_150 Hb_000940_050 Hb_000940_050 Hb_001824_030--Hb_000940_050 Hb_001824_030--Hb_016448_010 Hb_001824_030--Hb_003506_030 Hb_002045_170 Hb_002045_170 Hb_001824_030--Hb_002045_170 Hb_011716_010 Hb_011716_010 Hb_001824_030--Hb_011716_010 Hb_003449_100 Hb_003449_100 Hb_001824_030--Hb_003449_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.409 9.28169 26.6121 19.8899 6.24393 10.7339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.82418 3.8981 1.82823 9.15192 12.9081

CAGE analysis