Hb_001519_050

Information

Type -
Description -
Location Contig1519: 26830-30160
Sequence    

Annotation

kegg
ID rcu:RCOM_0817000
description Sporulation protein RMD5, putative
nr
ID XP_012074561.1
description PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
swissprot
ID Q80YQ8
description Protein RMD5 homolog A OS=Mus musculus GN=Rmnd5a PE=2 SV=2
trembl
ID A0A067KI79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09908 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein rmd5 homolog a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12933: 26751-30025 , PASA_asmbl_12934: 28350-28770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001519_050 0.0 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
2 Hb_000635_150 0.0657112305 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
3 Hb_000373_130 0.0659391262 - - PREDICTED: protein FAM188A [Jatropha curcas]
4 Hb_000125_190 0.0674854045 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
5 Hb_004705_120 0.0735211486 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000005_080 0.0739411958 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
7 Hb_002061_040 0.0751191017 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
8 Hb_000058_060 0.0764209304 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
9 Hb_002005_020 0.0785457773 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000985_060 0.0788950377 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
11 Hb_005568_120 0.0822270096 - - Prephenate dehydratase [Hevea brasiliensis]
12 Hb_004837_160 0.0845618658 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
13 Hb_028515_010 0.0854079391 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
14 Hb_011953_020 0.0855993758 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
15 Hb_003349_090 0.0878423528 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
16 Hb_000347_410 0.0882668508 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
17 Hb_029866_020 0.0886034709 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
18 Hb_012114_040 0.0896284359 - - DNA binding protein, putative [Ricinus communis]
19 Hb_011173_050 0.0897995347 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
20 Hb_002007_210 0.0901614309 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001519_050 Hb_001519_050 Hb_000635_150 Hb_000635_150 Hb_001519_050--Hb_000635_150 Hb_000373_130 Hb_000373_130 Hb_001519_050--Hb_000373_130 Hb_000125_190 Hb_000125_190 Hb_001519_050--Hb_000125_190 Hb_004705_120 Hb_004705_120 Hb_001519_050--Hb_004705_120 Hb_000005_080 Hb_000005_080 Hb_001519_050--Hb_000005_080 Hb_002061_040 Hb_002061_040 Hb_001519_050--Hb_002061_040 Hb_000985_060 Hb_000985_060 Hb_000635_150--Hb_000985_060 Hb_005092_060 Hb_005092_060 Hb_000635_150--Hb_005092_060 Hb_000635_150--Hb_000125_190 Hb_002759_060 Hb_002759_060 Hb_000635_150--Hb_002759_060 Hb_002005_020 Hb_002005_020 Hb_000635_150--Hb_002005_020 Hb_004837_160 Hb_004837_160 Hb_000373_130--Hb_004837_160 Hb_028515_010 Hb_028515_010 Hb_000373_130--Hb_028515_010 Hb_003349_090 Hb_003349_090 Hb_000373_130--Hb_003349_090 Hb_005568_120 Hb_005568_120 Hb_000373_130--Hb_005568_120 Hb_000567_120 Hb_000567_120 Hb_000373_130--Hb_000567_120 Hb_020400_050 Hb_020400_050 Hb_000125_190--Hb_020400_050 Hb_000125_190--Hb_002061_040 Hb_000123_170 Hb_000123_170 Hb_000125_190--Hb_000123_170 Hb_001833_110 Hb_001833_110 Hb_000125_190--Hb_001833_110 Hb_004705_120--Hb_000125_190 Hb_008616_070 Hb_008616_070 Hb_004705_120--Hb_008616_070 Hb_004705_120--Hb_000373_130 Hb_015778_010 Hb_015778_010 Hb_004705_120--Hb_015778_010 Hb_001080_280 Hb_001080_280 Hb_004705_120--Hb_001080_280 Hb_000705_210 Hb_000705_210 Hb_000005_080--Hb_000705_210 Hb_000005_080--Hb_002061_040 Hb_001247_100 Hb_001247_100 Hb_000005_080--Hb_001247_100 Hb_000009_460 Hb_000009_460 Hb_000005_080--Hb_000009_460 Hb_004738_100 Hb_004738_100 Hb_000005_080--Hb_004738_100 Hb_001653_020 Hb_001653_020 Hb_002061_040--Hb_001653_020 Hb_012053_070 Hb_012053_070 Hb_002061_040--Hb_012053_070 Hb_007416_320 Hb_007416_320 Hb_002061_040--Hb_007416_320 Hb_002061_040--Hb_000009_460 Hb_172426_040 Hb_172426_040 Hb_002061_040--Hb_172426_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.87922 9.58389 6.45494 13.0677 8.37923 15.2021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.7847 24.9622 27.0722 12.0887 6.92168

CAGE analysis