Hb_001519_090

Information

Type -
Description -
Location Contig1519: 87338-98767
Sequence    

Annotation

kegg
ID fve:101307440
description uncharacterized protein LOC101307440
nr
ID XP_012066668.1
description PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
swissprot
ID Q502K3
description Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1
trembl
ID A0A067L1U2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00238 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12937: 86553-86796 , PASA_asmbl_12938: 85227-89250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001519_090 0.0 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
2 Hb_000312_100 0.0653030602 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
3 Hb_003207_120 0.0827821833 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
4 Hb_129956_010 0.0863594103 - - PREDICTED: serine/threonine-protein kinase SAPK2 [Eucalyptus grandis]
5 Hb_005276_140 0.0889531685 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000139_040 0.0904891505 - - spermine synthase, putative [Ricinus communis]
7 Hb_029695_090 0.097103602 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
8 Hb_005977_080 0.1000655898 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
9 Hb_023827_030 0.1035538009 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
10 Hb_001258_130 0.1038763255 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
11 Hb_004137_110 0.1044940354 - - PREDICTED: probable auxin efflux carrier component 6 [Jatropha curcas]
12 Hb_049846_010 0.104507955 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
13 Hb_006620_030 0.1045808975 - - nitrate reductase, putative [Ricinus communis]
14 Hb_000331_170 0.104875075 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
15 Hb_007007_100 0.1063595483 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
16 Hb_006501_130 0.1064659375 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000333_020 0.1074841711 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
18 Hb_105148_020 0.1084462387 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
19 Hb_000031_240 0.1100065222 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
20 Hb_016297_010 0.1103303479 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]

Gene co-expression network

sample Hb_001519_090 Hb_001519_090 Hb_000312_100 Hb_000312_100 Hb_001519_090--Hb_000312_100 Hb_003207_120 Hb_003207_120 Hb_001519_090--Hb_003207_120 Hb_129956_010 Hb_129956_010 Hb_001519_090--Hb_129956_010 Hb_005276_140 Hb_005276_140 Hb_001519_090--Hb_005276_140 Hb_000139_040 Hb_000139_040 Hb_001519_090--Hb_000139_040 Hb_029695_090 Hb_029695_090 Hb_001519_090--Hb_029695_090 Hb_023827_030 Hb_023827_030 Hb_000312_100--Hb_023827_030 Hb_000312_100--Hb_129956_010 Hb_000312_100--Hb_005276_140 Hb_000333_020 Hb_000333_020 Hb_000312_100--Hb_000333_020 Hb_000312_100--Hb_029695_090 Hb_004202_030 Hb_004202_030 Hb_003207_120--Hb_004202_030 Hb_002518_040 Hb_002518_040 Hb_003207_120--Hb_002518_040 Hb_005977_080 Hb_005977_080 Hb_003207_120--Hb_005977_080 Hb_004137_110 Hb_004137_110 Hb_003207_120--Hb_004137_110 Hb_000086_470 Hb_000086_470 Hb_003207_120--Hb_000086_470 Hb_129956_010--Hb_023827_030 Hb_105148_020 Hb_105148_020 Hb_129956_010--Hb_105148_020 Hb_049846_010 Hb_049846_010 Hb_129956_010--Hb_049846_010 Hb_006620_030 Hb_006620_030 Hb_129956_010--Hb_006620_030 Hb_129956_010--Hb_000139_040 Hb_000331_170 Hb_000331_170 Hb_005276_140--Hb_000331_170 Hb_132840_190 Hb_132840_190 Hb_005276_140--Hb_132840_190 Hb_000058_180 Hb_000058_180 Hb_005276_140--Hb_000058_180 Hb_007221_020 Hb_007221_020 Hb_005276_140--Hb_007221_020 Hb_000139_040--Hb_049846_010 Hb_001258_130 Hb_001258_130 Hb_000139_040--Hb_001258_130 Hb_023640_020 Hb_023640_020 Hb_000139_040--Hb_023640_020 Hb_000031_240 Hb_000031_240 Hb_000139_040--Hb_000031_240 Hb_005357_140 Hb_005357_140 Hb_000139_040--Hb_005357_140 Hb_000413_050 Hb_000413_050 Hb_029695_090--Hb_000413_050 Hb_004223_150 Hb_004223_150 Hb_029695_090--Hb_004223_150 Hb_000007_330 Hb_000007_330 Hb_029695_090--Hb_000007_330 Hb_011472_030 Hb_011472_030 Hb_029695_090--Hb_011472_030 Hb_012395_090 Hb_012395_090 Hb_029695_090--Hb_012395_090 Hb_000881_020 Hb_000881_020 Hb_029695_090--Hb_000881_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00791475 1.01153 10.3201 5.63172 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0538945 0.0282725 0 0.0112284 4.65584

CAGE analysis