Hb_001519_210

Information

Type -
Description -
Location Contig1519: 249927-251130
Sequence    

Annotation

kegg
ID pop:POPTR_0012s12180g
description hypothetical protein
nr
ID KJB18065.1
description hypothetical protein B456_003G032500 [Gossypium raimondii]
swissprot
ID P32476
description Squalene monooxygenase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG1 PE=1 SV=2
trembl
ID A0A0D2RFX8
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G032500 PE=4 SV=1
Gene Ontology
ID GO:0016021
description squalene monooxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001519_210 0.0 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
2 Hb_050334_010 0.0881424255 - - -
3 Hb_043792_020 0.1109048889 - - Retrotransposon gag protein [Medicago truncatula]
4 Hb_012295_020 0.138175283 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
5 Hb_032531_010 0.1409724054 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_012071_010 0.1426822983 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
7 Hb_002869_070 0.1524499342 - - -
8 Hb_002473_140 0.171654535 - - -
9 Hb_159938_010 0.1720378277 - - phosphoprotein phosphatase, putative [Ricinus communis]
10 Hb_005439_010 0.173782057 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
11 Hb_000940_190 0.1787419743 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
12 Hb_155556_010 0.1815521049 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
13 Hb_099723_010 0.1819494979 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
14 Hb_065943_010 0.1948240176 - - -
15 Hb_004212_040 0.2008865263 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_006157_050 0.2029117912 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_142570_010 0.20572081 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
18 Hb_154997_010 0.2083007266 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
19 Hb_128531_010 0.2265337647 - - phosphoprotein phosphatase, putative [Ricinus communis]
20 Hb_088410_010 0.2285057317 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001519_210 Hb_001519_210 Hb_050334_010 Hb_050334_010 Hb_001519_210--Hb_050334_010 Hb_043792_020 Hb_043792_020 Hb_001519_210--Hb_043792_020 Hb_012295_020 Hb_012295_020 Hb_001519_210--Hb_012295_020 Hb_032531_010 Hb_032531_010 Hb_001519_210--Hb_032531_010 Hb_012071_010 Hb_012071_010 Hb_001519_210--Hb_012071_010 Hb_002869_070 Hb_002869_070 Hb_001519_210--Hb_002869_070 Hb_050334_010--Hb_032531_010 Hb_000940_190 Hb_000940_190 Hb_050334_010--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_050334_010--Hb_099723_010 Hb_050334_010--Hb_002869_070 Hb_065943_010 Hb_065943_010 Hb_050334_010--Hb_065943_010 Hb_159938_010 Hb_159938_010 Hb_043792_020--Hb_159938_010 Hb_005439_010 Hb_005439_010 Hb_043792_020--Hb_005439_010 Hb_154997_010 Hb_154997_010 Hb_043792_020--Hb_154997_010 Hb_128531_010 Hb_128531_010 Hb_043792_020--Hb_128531_010 Hb_043792_020--Hb_050334_010 Hb_012295_020--Hb_012071_010 Hb_000065_050 Hb_000065_050 Hb_012295_020--Hb_000065_050 Hb_012295_020--Hb_032531_010 Hb_012295_020--Hb_050334_010 Hb_155556_010 Hb_155556_010 Hb_012295_020--Hb_155556_010 Hb_032531_010--Hb_000940_190 Hb_032531_010--Hb_099723_010 Hb_032531_010--Hb_065943_010 Hb_006157_050 Hb_006157_050 Hb_032531_010--Hb_006157_050 Hb_012071_010--Hb_000065_050 Hb_012071_010--Hb_032531_010 Hb_012071_010--Hb_155556_010 Hb_012071_010--Hb_050334_010 Hb_006933_010 Hb_006933_010 Hb_002869_070--Hb_006933_010 Hb_002869_070--Hb_154997_010 Hb_004124_010 Hb_004124_010 Hb_002869_070--Hb_004124_010 Hb_002473_140 Hb_002473_140 Hb_002869_070--Hb_002473_140 Hb_002869_070--Hb_006157_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.108921 0.0988554 0.241533

CAGE analysis