Hb_001522_010

Information

Type -
Description -
Location Contig1522: 20423-29088
Sequence    

Annotation

kegg
ID rcu:RCOM_0853170
description nop14, putative
nr
ID XP_012082537.1
description PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
swissprot
ID P78316
description Nucleolar protein 14 OS=Homo sapiens GN=NOP14 PE=1 SV=3
trembl
ID A0A067LDW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09682 PE=4 SV=1
Gene Ontology
ID GO:0005829
description nucleolar protein 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13081: 20980-24237 , PASA_asmbl_13082: 24254-29164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001522_010 0.0 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
2 Hb_002188_090 0.0876560064 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
3 Hb_006829_090 0.0999824723 - - PREDICTED: protein MOS2 [Jatropha curcas]
4 Hb_078477_040 0.1028718866 - - nuclear movement protein nudc, putative [Ricinus communis]
5 Hb_005462_020 0.1032485119 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
6 Hb_001009_290 0.1066423794 - - PREDICTED: elongator complex protein 3-like [Populus euphratica]
7 Hb_000313_340 0.1069386868 - - DNA repair protein xp-E, putative [Ricinus communis]
8 Hb_002612_010 0.1081704262 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
9 Hb_057451_010 0.1082014404 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
10 Hb_000317_150 0.1100788943 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
11 Hb_001196_060 0.1111567827 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
12 Hb_004970_160 0.1174880673 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
13 Hb_003540_160 0.1175867185 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
14 Hb_000640_200 0.1182158983 - - hypothetical protein RCOM_1346600 [Ricinus communis]
15 Hb_006002_030 0.1183801862 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
16 Hb_015763_020 0.1195697097 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
17 Hb_031069_020 0.1197249393 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
18 Hb_001473_080 0.1206755901 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
19 Hb_101151_020 0.1220435922 - - DNA binding protein, putative [Ricinus communis]
20 Hb_006588_050 0.1224794589 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_001522_010 Hb_001522_010 Hb_002188_090 Hb_002188_090 Hb_001522_010--Hb_002188_090 Hb_006829_090 Hb_006829_090 Hb_001522_010--Hb_006829_090 Hb_078477_040 Hb_078477_040 Hb_001522_010--Hb_078477_040 Hb_005462_020 Hb_005462_020 Hb_001522_010--Hb_005462_020 Hb_001009_290 Hb_001009_290 Hb_001522_010--Hb_001009_290 Hb_000313_340 Hb_000313_340 Hb_001522_010--Hb_000313_340 Hb_001196_060 Hb_001196_060 Hb_002188_090--Hb_001196_060 Hb_002188_090--Hb_005462_020 Hb_004970_160 Hb_004970_160 Hb_002188_090--Hb_004970_160 Hb_000363_380 Hb_000363_380 Hb_002188_090--Hb_000363_380 Hb_000504_150 Hb_000504_150 Hb_002188_090--Hb_000504_150 Hb_006829_090--Hb_078477_040 Hb_006002_030 Hb_006002_030 Hb_006829_090--Hb_006002_030 Hb_000120_510 Hb_000120_510 Hb_006829_090--Hb_000120_510 Hb_001396_290 Hb_001396_290 Hb_006829_090--Hb_001396_290 Hb_002133_030 Hb_002133_030 Hb_006829_090--Hb_002133_030 Hb_006829_090--Hb_005462_020 Hb_078477_040--Hb_006002_030 Hb_078477_040--Hb_005462_020 Hb_001278_060 Hb_001278_060 Hb_078477_040--Hb_001278_060 Hb_001489_070 Hb_001489_070 Hb_078477_040--Hb_001489_070 Hb_022250_110 Hb_022250_110 Hb_078477_040--Hb_022250_110 Hb_005462_020--Hb_004970_160 Hb_005462_020--Hb_006002_030 Hb_005462_020--Hb_022250_110 Hb_000120_620 Hb_000120_620 Hb_005462_020--Hb_000120_620 Hb_009558_040 Hb_009558_040 Hb_001009_290--Hb_009558_040 Hb_007885_070 Hb_007885_070 Hb_001009_290--Hb_007885_070 Hb_009178_020 Hb_009178_020 Hb_001009_290--Hb_009178_020 Hb_001529_060 Hb_001529_060 Hb_001009_290--Hb_001529_060 Hb_001009_290--Hb_006829_090 Hb_140049_020 Hb_140049_020 Hb_000313_340--Hb_140049_020 Hb_001946_300 Hb_001946_300 Hb_000313_340--Hb_001946_300 Hb_000313_340--Hb_007885_070 Hb_004899_070 Hb_004899_070 Hb_000313_340--Hb_004899_070 Hb_000261_290 Hb_000261_290 Hb_000313_340--Hb_000261_290 Hb_000363_130 Hb_000363_130 Hb_000313_340--Hb_000363_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.4421 41.1605 15.0697 8.84458 81.2777 50.4657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4594 5.46997 10.4388 22.9806 14.6833

CAGE analysis