Hb_001523_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1523: 20362-26507
Sequence    

Annotation

kegg
ID cic:CICLE_v10018644mg
description hypothetical protein
nr
ID KDP24756.1
description hypothetical protein JCGZ_25496 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067JLB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25496 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13091: 22524-22805 , PASA_asmbl_13092: 23051-23272 , PASA_asmbl_13093: 23359-24037 , PASA_asmbl_13095: 25481-26363 , PASA_asmbl_13096: 25948-26204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001523_010 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
2 Hb_000466_060 0.0618070411 - - phosphofructokinase [Hevea brasiliensis]
3 Hb_000172_530 0.0651579387 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
4 Hb_113216_010 0.0863464088 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
5 Hb_005016_030 0.0983528432 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
6 Hb_000270_450 0.1020931301 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
7 Hb_001825_010 0.1045031945 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
8 Hb_002837_070 0.1052049492 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
9 Hb_000320_440 0.1091579488 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
10 Hb_006478_070 0.1099563068 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
11 Hb_006173_020 0.1100803358 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
12 Hb_001178_060 0.112076198 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
13 Hb_001846_080 0.1139234685 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
14 Hb_001140_080 0.1185861248 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
15 Hb_000732_020 0.1190896936 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
16 Hb_025048_040 0.1193017389 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
17 Hb_000365_350 0.1198585953 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
18 Hb_000322_170 0.1206285941 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
19 Hb_000213_060 0.121359502 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
20 Hb_000088_180 0.1234494283 - - hypothetical protein JCGZ_11198 [Jatropha curcas]

Gene co-expression network

sample Hb_001523_010 Hb_001523_010 Hb_000466_060 Hb_000466_060 Hb_001523_010--Hb_000466_060 Hb_000172_530 Hb_000172_530 Hb_001523_010--Hb_000172_530 Hb_113216_010 Hb_113216_010 Hb_001523_010--Hb_113216_010 Hb_005016_030 Hb_005016_030 Hb_001523_010--Hb_005016_030 Hb_000270_450 Hb_000270_450 Hb_001523_010--Hb_000270_450 Hb_001825_010 Hb_001825_010 Hb_001523_010--Hb_001825_010 Hb_000466_060--Hb_000172_530 Hb_000466_060--Hb_113216_010 Hb_000213_060 Hb_000213_060 Hb_000466_060--Hb_000213_060 Hb_002837_070 Hb_002837_070 Hb_000466_060--Hb_002837_070 Hb_000016_180 Hb_000016_180 Hb_000466_060--Hb_000016_180 Hb_000320_440 Hb_000320_440 Hb_000172_530--Hb_000320_440 Hb_001846_080 Hb_001846_080 Hb_000172_530--Hb_001846_080 Hb_006478_070 Hb_006478_070 Hb_000172_530--Hb_006478_070 Hb_000172_530--Hb_005016_030 Hb_000212_280 Hb_000212_280 Hb_113216_010--Hb_000212_280 Hb_113216_010--Hb_000016_180 Hb_113216_010--Hb_002837_070 Hb_000185_090 Hb_000185_090 Hb_113216_010--Hb_000185_090 Hb_025048_040 Hb_025048_040 Hb_113216_010--Hb_025048_040 Hb_174865_050 Hb_174865_050 Hb_113216_010--Hb_174865_050 Hb_001178_060 Hb_001178_060 Hb_005016_030--Hb_001178_060 Hb_000322_170 Hb_000322_170 Hb_005016_030--Hb_000322_170 Hb_002149_040 Hb_002149_040 Hb_005016_030--Hb_002149_040 Hb_006173_020 Hb_006173_020 Hb_005016_030--Hb_006173_020 Hb_005016_030--Hb_000320_440 Hb_001016_060 Hb_001016_060 Hb_005016_030--Hb_001016_060 Hb_001009_050 Hb_001009_050 Hb_000270_450--Hb_001009_050 Hb_001140_080 Hb_001140_080 Hb_000270_450--Hb_001140_080 Hb_000270_450--Hb_025048_040 Hb_009615_110 Hb_009615_110 Hb_000270_450--Hb_009615_110 Hb_000270_450--Hb_005016_030 Hb_000270_450--Hb_000320_440 Hb_012977_010 Hb_012977_010 Hb_001825_010--Hb_012977_010 Hb_000365_350 Hb_000365_350 Hb_001825_010--Hb_000365_350 Hb_001825_010--Hb_002149_040 Hb_000416_100 Hb_000416_100 Hb_001825_010--Hb_000416_100 Hb_000363_340 Hb_000363_340 Hb_001825_010--Hb_000363_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.6678 6.38162 0.472424 2.58251 22.7115 38.2695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3311 7.60105 6.008 2.62897 0.716561

CAGE analysis