Hb_001523_030

Information

Type -
Description -
Location Contig1523: 40722-41360
Sequence    

Annotation

kegg
ID rcu:RCOM_1382640
description protein binding protein, putative
nr
ID XP_002522096.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7Y0
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1382640 PE=4 SV=1
Gene Ontology
ID GO:0047134
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001523_030 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_012092_080 0.1837705945 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
3 Hb_053998_020 0.2033892263 - - -
4 Hb_062192_060 0.2443581554 - - maturase (mitochondrion) [Hevea brasiliensis]
5 Hb_001282_030 0.2465851548 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
6 Hb_013420_040 0.2493753273 - - unnamed protein product [Vitis vinifera]
7 Hb_097021_010 0.2549337361 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
8 Hb_005742_010 0.2650096988 - - hypothetical protein, partial [Pseudomonas fluorescens]
9 Hb_041813_050 0.2656493876 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
10 Hb_171685_030 0.2676243763 - - URF-1 [Citrullus lanatus]
11 Hb_000268_100 0.271846437 - - -
12 Hb_000159_020 0.2752322449 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
13 Hb_041813_010 0.2778725467 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012463_010 0.2793467639 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
15 Hb_170559_010 0.2796052707 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_002014_070 0.2798187055 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_049275_010 0.2801240505 - - PREDICTED: F-box/LRR-repeat protein 4-like [Populus euphratica]
18 Hb_057451_040 0.2864875637 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000710_160 0.2908194894 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
20 Hb_171685_040 0.2919405614 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_001523_030 Hb_001523_030 Hb_012092_080 Hb_012092_080 Hb_001523_030--Hb_012092_080 Hb_053998_020 Hb_053998_020 Hb_001523_030--Hb_053998_020 Hb_062192_060 Hb_062192_060 Hb_001523_030--Hb_062192_060 Hb_001282_030 Hb_001282_030 Hb_001523_030--Hb_001282_030 Hb_013420_040 Hb_013420_040 Hb_001523_030--Hb_013420_040 Hb_097021_010 Hb_097021_010 Hb_001523_030--Hb_097021_010 Hb_012092_080--Hb_097021_010 Hb_041813_050 Hb_041813_050 Hb_012092_080--Hb_041813_050 Hb_012463_010 Hb_012463_010 Hb_012092_080--Hb_012463_010 Hb_012092_080--Hb_001282_030 Hb_041813_010 Hb_041813_010 Hb_012092_080--Hb_041813_010 Hb_002014_070 Hb_002014_070 Hb_053998_020--Hb_002014_070 Hb_062273_010 Hb_062273_010 Hb_053998_020--Hb_062273_010 Hb_041813_060 Hb_041813_060 Hb_053998_020--Hb_041813_060 Hb_003333_040 Hb_003333_040 Hb_053998_020--Hb_003333_040 Hb_102602_020 Hb_102602_020 Hb_053998_020--Hb_102602_020 Hb_002482_050 Hb_002482_050 Hb_062192_060--Hb_002482_050 Hb_062192_060--Hb_041813_050 Hb_005154_090 Hb_005154_090 Hb_062192_060--Hb_005154_090 Hb_003362_020 Hb_003362_020 Hb_062192_060--Hb_003362_020 Hb_171685_030 Hb_171685_030 Hb_062192_060--Hb_171685_030 Hb_003746_020 Hb_003746_020 Hb_062192_060--Hb_003746_020 Hb_115656_010 Hb_115656_010 Hb_001282_030--Hb_115656_010 Hb_086607_010 Hb_086607_010 Hb_001282_030--Hb_086607_010 Hb_057451_040 Hb_057451_040 Hb_001282_030--Hb_057451_040 Hb_004212_040 Hb_004212_040 Hb_001282_030--Hb_004212_040 Hb_121041_010 Hb_121041_010 Hb_013420_040--Hb_121041_010 Hb_042463_020 Hb_042463_020 Hb_013420_040--Hb_042463_020 Hb_158203_010 Hb_158203_010 Hb_013420_040--Hb_158203_010 Hb_171685_020 Hb_171685_020 Hb_013420_040--Hb_171685_020 Hb_006474_010 Hb_006474_010 Hb_013420_040--Hb_006474_010 Hb_170559_010 Hb_170559_010 Hb_013420_040--Hb_170559_010 Hb_097021_010--Hb_041813_050 Hb_097021_010--Hb_062192_060 Hb_142570_010 Hb_142570_010 Hb_097021_010--Hb_142570_010 Hb_014324_010 Hb_014324_010 Hb_097021_010--Hb_014324_010 Hb_009848_050 Hb_009848_050 Hb_097021_010--Hb_009848_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.201204 0.11467 0 0.111531 0 0.11165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.383072 0.177441 1.41396

CAGE analysis