Hb_001524_100

Information

Type -
Description -
Location Contig1524: 202441-204934
Sequence    

Annotation

kegg
ID bvg:104886473
description uncharacterized LOC104886473
nr
ID XP_012073479.1
description PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID Q2AA09
description Retrotransposon gag protein OS=Asparagus officinalis GN=20.t00008 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001524_100 0.0 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
2 Hb_002240_100 0.0749306614 - - -
3 Hb_001226_080 0.2189279133 - - heat-shock protein, putative [Ricinus communis]
4 Hb_003847_010 0.2531258506 - - -
5 Hb_000174_280 0.2908050989 - - -
6 Hb_005803_020 0.3002195348 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
7 Hb_152439_010 0.3002406642 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
8 Hb_002188_020 0.3091878815 - - unnamed protein product [Vitis vinifera]
9 Hb_178613_010 0.3103924206 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
10 Hb_128287_010 0.3190330215 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_000380_200 0.3193678813 - - -
12 Hb_108404_010 0.3199551439 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_000204_180 0.3204836174 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
14 Hb_000227_110 0.3241276109 - - hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]
15 Hb_002141_010 0.3262902631 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
16 Hb_002673_050 0.326807641 - - -
17 Hb_091369_010 0.3272309982 - - -
18 Hb_008473_010 0.3274397943 - - PREDICTED: laccase-14-like [Jatropha curcas]
19 Hb_000076_170 0.3296399482 - - hypothetical protein JCGZ_00832 [Jatropha curcas]
20 Hb_000944_010 0.3298664705 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]

Gene co-expression network

sample Hb_001524_100 Hb_001524_100 Hb_002240_100 Hb_002240_100 Hb_001524_100--Hb_002240_100 Hb_001226_080 Hb_001226_080 Hb_001524_100--Hb_001226_080 Hb_003847_010 Hb_003847_010 Hb_001524_100--Hb_003847_010 Hb_000174_280 Hb_000174_280 Hb_001524_100--Hb_000174_280 Hb_005803_020 Hb_005803_020 Hb_001524_100--Hb_005803_020 Hb_152439_010 Hb_152439_010 Hb_001524_100--Hb_152439_010 Hb_002240_100--Hb_001226_080 Hb_002240_100--Hb_003847_010 Hb_002240_100--Hb_000174_280 Hb_002240_100--Hb_152439_010 Hb_178613_010 Hb_178613_010 Hb_002240_100--Hb_178613_010 Hb_001226_080--Hb_003847_010 Hb_013205_010 Hb_013205_010 Hb_001226_080--Hb_013205_010 Hb_027394_010 Hb_027394_010 Hb_001226_080--Hb_027394_010 Hb_068347_020 Hb_068347_020 Hb_001226_080--Hb_068347_020 Hb_009066_010 Hb_009066_010 Hb_001226_080--Hb_009066_010 Hb_003847_010--Hb_000174_280 Hb_012340_040 Hb_012340_040 Hb_003847_010--Hb_012340_040 Hb_004829_020 Hb_004829_020 Hb_003847_010--Hb_004829_020 Hb_003847_010--Hb_152439_010 Hb_000174_280--Hb_012340_040 Hb_000174_280--Hb_004829_020 Hb_000174_280--Hb_001226_080 Hb_062858_010 Hb_062858_010 Hb_000174_280--Hb_062858_010 Hb_030736_110 Hb_030736_110 Hb_005803_020--Hb_030736_110 Hb_000364_110 Hb_000364_110 Hb_005803_020--Hb_000364_110 Hb_002485_020 Hb_002485_020 Hb_005803_020--Hb_002485_020 Hb_005803_020--Hb_152439_010 Hb_003811_010 Hb_003811_010 Hb_005803_020--Hb_003811_010 Hb_152439_010--Hb_000364_110 Hb_152439_010--Hb_000174_280 Hb_152439_010--Hb_001226_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0544752 0.0334064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0205024 0

CAGE analysis