Hb_001529_020

Information

Type -
Description -
Location Contig1529: 16024-21015
Sequence    

Annotation

kegg
ID rcu:RCOM_0446110
description ankyrin repeat-containing protein, putative
nr
ID XP_002533395.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B9T576
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0446110 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing protein at5g02620-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13128: 16270-18743 , PASA_asmbl_13129: 16270-18743 , PASA_asmbl_13131: 20712-21160
cDNA
(Sanger)
(ID:Location)		 005_N11.ab1: 16270-17066

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001529_020 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_002042_190 0.1392180072 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
3 Hb_007305_040 0.1407217524 - - Nodulin-26, putative [Ricinus communis]
4 Hb_004607_180 0.1407843226 - - conserved hypothetical protein [Ricinus communis]
5 Hb_152764_010 0.1411683621 - - Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_000625_040 0.141435383 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
7 Hb_007371_010 0.1447135516 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
8 Hb_000347_370 0.1486573146 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
9 Hb_001131_100 0.1486854005 - - PREDICTED: uncharacterized protein LOC105638386 [Jatropha curcas]
10 Hb_133646_010 0.1501294056 - - hypothetical protein RCOM_1044030 [Ricinus communis]
11 Hb_024857_010 0.1595795836 - - glutaredoxin 2.1 [Hevea brasiliensis]
12 Hb_011928_030 0.1604558596 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
13 Hb_000840_230 0.1604989117 - - RING-H2 finger protein ATL1L, putative [Ricinus communis]
14 Hb_002639_090 0.1614530386 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
15 Hb_001168_100 0.1615797171 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Citrus sinensis]
16 Hb_183539_010 0.1625632885 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
17 Hb_000627_140 0.1626289172 - - ATP binding protein, putative [Ricinus communis]
18 Hb_001510_050 0.1629498136 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000431_030 0.1634899774 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
20 Hb_000336_160 0.1671211364 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001529_020 Hb_001529_020 Hb_002042_190 Hb_002042_190 Hb_001529_020--Hb_002042_190 Hb_007305_040 Hb_007305_040 Hb_001529_020--Hb_007305_040 Hb_004607_180 Hb_004607_180 Hb_001529_020--Hb_004607_180 Hb_152764_010 Hb_152764_010 Hb_001529_020--Hb_152764_010 Hb_000625_040 Hb_000625_040 Hb_001529_020--Hb_000625_040 Hb_007371_010 Hb_007371_010 Hb_001529_020--Hb_007371_010 Hb_174829_040 Hb_174829_040 Hb_002042_190--Hb_174829_040 Hb_000142_010 Hb_000142_010 Hb_002042_190--Hb_000142_010 Hb_000172_300 Hb_000172_300 Hb_002042_190--Hb_000172_300 Hb_116349_050 Hb_116349_050 Hb_002042_190--Hb_116349_050 Hb_052113_020 Hb_052113_020 Hb_002042_190--Hb_052113_020 Hb_000210_150 Hb_000210_150 Hb_002042_190--Hb_000210_150 Hb_007305_040--Hb_000625_040 Hb_002236_020 Hb_002236_020 Hb_007305_040--Hb_002236_020 Hb_000347_370 Hb_000347_370 Hb_007305_040--Hb_000347_370 Hb_024857_010 Hb_024857_010 Hb_007305_040--Hb_024857_010 Hb_004531_010 Hb_004531_010 Hb_007305_040--Hb_004531_010 Hb_000260_130 Hb_000260_130 Hb_007305_040--Hb_000260_130 Hb_077562_010 Hb_077562_010 Hb_004607_180--Hb_077562_010 Hb_000318_320 Hb_000318_320 Hb_004607_180--Hb_000318_320 Hb_002639_090 Hb_002639_090 Hb_004607_180--Hb_002639_090 Hb_087468_010 Hb_087468_010 Hb_004607_180--Hb_087468_010 Hb_017434_020 Hb_017434_020 Hb_004607_180--Hb_017434_020 Hb_152764_010--Hb_007371_010 Hb_133646_010 Hb_133646_010 Hb_152764_010--Hb_133646_010 Hb_000336_160 Hb_000336_160 Hb_152764_010--Hb_000336_160 Hb_027913_010 Hb_027913_010 Hb_152764_010--Hb_027913_010 Hb_001510_050 Hb_001510_050 Hb_152764_010--Hb_001510_050 Hb_003376_150 Hb_003376_150 Hb_000625_040--Hb_003376_150 Hb_166155_010 Hb_166155_010 Hb_000625_040--Hb_166155_010 Hb_002890_060 Hb_002890_060 Hb_000625_040--Hb_002890_060 Hb_000123_310 Hb_000123_310 Hb_000625_040--Hb_000123_310 Hb_004122_020 Hb_004122_020 Hb_000625_040--Hb_004122_020 Hb_007371_010--Hb_001510_050 Hb_010368_040 Hb_010368_040 Hb_007371_010--Hb_010368_040 Hb_007371_010--Hb_133646_010 Hb_007371_010--Hb_000336_160 Hb_001693_030 Hb_001693_030 Hb_007371_010--Hb_001693_030 Hb_004098_010 Hb_004098_010 Hb_007371_010--Hb_004098_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.624847 26.1233 0.436136 6.21229 0.0295707 0.242164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.01873 0.434787

CAGE analysis