Hb_001529_040

Information

Type -
Description -
Location Contig1529: 21836-23425
Sequence    

Annotation

kegg
ID vvi:104878334
description pentatricopeptide repeat-containing protein At5g66520-like
nr
ID XP_012074042.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
swissprot
ID Q9FJY7
description Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
trembl
ID M5Y0G5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025518mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at5g66520-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13131: 20712-21160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001529_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
2 Hb_003060_060 0.0673181019 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
3 Hb_000395_070 0.0854481996 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
4 Hb_001913_060 0.0866825073 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
5 Hb_000494_070 0.0887831239 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
6 Hb_002740_110 0.0891760255 - - PREDICTED: phytochrome A [Jatropha curcas]
7 Hb_000740_100 0.0893111756 - - calpain, putative [Ricinus communis]
8 Hb_001343_040 0.0893884574 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
9 Hb_002784_110 0.0900055252 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
10 Hb_002329_040 0.0910031022 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
11 Hb_000183_020 0.0914871488 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
12 Hb_010174_110 0.0915268992 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
13 Hb_000398_120 0.0918400943 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like isoform X4 [Gossypium raimondii]
14 Hb_011928_020 0.092870186 - - something about silencing protein sas10, putative [Ricinus communis]
15 Hb_014267_010 0.0941559815 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
16 Hb_005488_150 0.0944816907 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000412_010 0.0951314616 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_011310_160 0.0952827392 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
19 Hb_003605_110 0.095547944 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X1 [Jatropha curcas]
20 Hb_011173_030 0.0955706766 - - pumilio, putative [Ricinus communis]

Gene co-expression network

sample Hb_001529_040 Hb_001529_040 Hb_003060_060 Hb_003060_060 Hb_001529_040--Hb_003060_060 Hb_000395_070 Hb_000395_070 Hb_001529_040--Hb_000395_070 Hb_001913_060 Hb_001913_060 Hb_001529_040--Hb_001913_060 Hb_000494_070 Hb_000494_070 Hb_001529_040--Hb_000494_070 Hb_002740_110 Hb_002740_110 Hb_001529_040--Hb_002740_110 Hb_000740_100 Hb_000740_100 Hb_001529_040--Hb_000740_100 Hb_000412_010 Hb_000412_010 Hb_003060_060--Hb_000412_010 Hb_003060_060--Hb_000395_070 Hb_000230_260 Hb_000230_260 Hb_003060_060--Hb_000230_260 Hb_085781_020 Hb_085781_020 Hb_003060_060--Hb_085781_020 Hb_041327_010 Hb_041327_010 Hb_003060_060--Hb_041327_010 Hb_012395_140 Hb_012395_140 Hb_000395_070--Hb_012395_140 Hb_000395_070--Hb_000740_100 Hb_000395_070--Hb_000412_010 Hb_002815_030 Hb_002815_030 Hb_000395_070--Hb_002815_030 Hb_000579_230 Hb_000579_230 Hb_000395_070--Hb_000579_230 Hb_002784_110 Hb_002784_110 Hb_001913_060--Hb_002784_110 Hb_001821_090 Hb_001821_090 Hb_001913_060--Hb_001821_090 Hb_002400_240 Hb_002400_240 Hb_001913_060--Hb_002400_240 Hb_002107_070 Hb_002107_070 Hb_001913_060--Hb_002107_070 Hb_000446_120 Hb_000446_120 Hb_001913_060--Hb_000446_120 Hb_002329_040 Hb_002329_040 Hb_001913_060--Hb_002329_040 Hb_003411_040 Hb_003411_040 Hb_000494_070--Hb_003411_040 Hb_000207_180 Hb_000207_180 Hb_000494_070--Hb_000207_180 Hb_001550_060 Hb_001550_060 Hb_000494_070--Hb_001550_060 Hb_000792_010 Hb_000792_010 Hb_000494_070--Hb_000792_010 Hb_000656_380 Hb_000656_380 Hb_000494_070--Hb_000656_380 Hb_000028_480 Hb_000028_480 Hb_000494_070--Hb_000028_480 Hb_003253_040 Hb_003253_040 Hb_002740_110--Hb_003253_040 Hb_010174_110 Hb_010174_110 Hb_002740_110--Hb_010174_110 Hb_000028_280 Hb_000028_280 Hb_002740_110--Hb_000028_280 Hb_004994_220 Hb_004994_220 Hb_002740_110--Hb_004994_220 Hb_004032_380 Hb_004032_380 Hb_002740_110--Hb_004032_380 Hb_004143_130 Hb_004143_130 Hb_002740_110--Hb_004143_130 Hb_000740_100--Hb_002329_040 Hb_000261_030 Hb_000261_030 Hb_000740_100--Hb_000261_030 Hb_008024_030 Hb_008024_030 Hb_000740_100--Hb_008024_030 Hb_011173_030 Hb_011173_030 Hb_000740_100--Hb_011173_030 Hb_104061_020 Hb_104061_020 Hb_000740_100--Hb_104061_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.441283 0.688455 0.331715 0.340513 0.930425 0.960536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.408957 0.321747 0.649074 0.962474 0.578313

CAGE analysis