Hb_001529_070

Information

Type transcription factor
Description TF Family: AP2
Location Contig1529: 68070-71102
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09900g
description POPTRDRAFT_578588; hypothetical protein
nr
ID XP_002325046.2
description hypothetical protein POPTR_0018s09900g [Populus trichocarpa]
swissprot
ID Q6PQQ3
description AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2
trembl
ID B9ILY0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s09900g PE=4 SV=2
Gene Ontology
ID GO:0003677
description ap2-like ethylene-responsive transcription factor ail5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13137: 68098-70729 , PASA_asmbl_13138: 69087-69252 , PASA_asmbl_13139: 70734-71092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001529_070 0.0 transcription factor TF Family: AP2 hypothetical protein POPTR_0018s09900g [Populus trichocarpa]
2 Hb_033594_070 0.2194976451 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
3 Hb_000175_580 0.2421048166 transcription factor, desease resistance TF Family: C3H, Gene Name: zf-CCCH hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
4 Hb_002081_170 0.2478957002 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
5 Hb_004102_030 0.2582186522 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
6 Hb_007386_010 0.26599334 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
7 Hb_032974_010 0.2797889997 - - -
8 Hb_000566_020 0.2803419274 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
9 Hb_006351_070 0.2832933599 - - heat-shock protein, putative [Ricinus communis]
10 Hb_021906_010 0.2905479802 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
11 Hb_044555_010 0.2932859541 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
12 Hb_002099_010 0.2959313284 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
13 Hb_001936_140 0.2962906063 - - PREDICTED: ATP-citrate synthase alpha chain protein 1 [Jatropha curcas]
14 Hb_107504_010 0.3091883705 - - -
15 Hb_003581_300 0.3094667736 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
16 Hb_010174_010 0.3114489444 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
17 Hb_004200_030 0.3137619508 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
18 Hb_000046_490 0.3198587428 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
19 Hb_004097_040 0.3231992863 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
20 Hb_012799_020 0.3242460086 - - metal ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001529_070 Hb_001529_070 Hb_033594_070 Hb_033594_070 Hb_001529_070--Hb_033594_070 Hb_000175_580 Hb_000175_580 Hb_001529_070--Hb_000175_580 Hb_002081_170 Hb_002081_170 Hb_001529_070--Hb_002081_170 Hb_004102_030 Hb_004102_030 Hb_001529_070--Hb_004102_030 Hb_007386_010 Hb_007386_010 Hb_001529_070--Hb_007386_010 Hb_032974_010 Hb_032974_010 Hb_001529_070--Hb_032974_010 Hb_000566_020 Hb_000566_020 Hb_033594_070--Hb_000566_020 Hb_014834_010 Hb_014834_010 Hb_033594_070--Hb_014834_010 Hb_033594_070--Hb_002081_170 Hb_003581_300 Hb_003581_300 Hb_033594_070--Hb_003581_300 Hb_033594_070--Hb_004102_030 Hb_160366_010 Hb_160366_010 Hb_000175_580--Hb_160366_010 Hb_000123_200 Hb_000123_200 Hb_000175_580--Hb_000123_200 Hb_021906_010 Hb_021906_010 Hb_000175_580--Hb_021906_010 Hb_141408_010 Hb_141408_010 Hb_000175_580--Hb_141408_010 Hb_002099_010 Hb_002099_010 Hb_000175_580--Hb_002099_010 Hb_044555_010 Hb_044555_010 Hb_002081_170--Hb_044555_010 Hb_004200_030 Hb_004200_030 Hb_002081_170--Hb_004200_030 Hb_004097_040 Hb_004097_040 Hb_002081_170--Hb_004097_040 Hb_001563_020 Hb_001563_020 Hb_002081_170--Hb_001563_020 Hb_002081_170--Hb_007386_010 Hb_009976_010 Hb_009976_010 Hb_004102_030--Hb_009976_010 Hb_000612_040 Hb_000612_040 Hb_004102_030--Hb_000612_040 Hb_084889_010 Hb_084889_010 Hb_004102_030--Hb_084889_010 Hb_004102_030--Hb_032974_010 Hb_000275_130 Hb_000275_130 Hb_004102_030--Hb_000275_130 Hb_148891_010 Hb_148891_010 Hb_004102_030--Hb_148891_010 Hb_007386_010--Hb_021906_010 Hb_007386_010--Hb_004200_030 Hb_007386_010--Hb_002099_010 Hb_002259_140 Hb_002259_140 Hb_007386_010--Hb_002259_140 Hb_007386_010--Hb_004097_040 Hb_007386_010--Hb_044555_010 Hb_000975_270 Hb_000975_270 Hb_032974_010--Hb_000975_270 Hb_005714_050 Hb_005714_050 Hb_032974_010--Hb_005714_050 Hb_069022_010 Hb_069022_010 Hb_032974_010--Hb_069022_010 Hb_032974_010--Hb_084889_010 Hb_001017_080 Hb_001017_080 Hb_032974_010--Hb_001017_080 Hb_000111_230 Hb_000111_230 Hb_032974_010--Hb_000111_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.356426 1.00419 8.22266 5.01918 1.27479 0.420594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.4507 10.0291 0.371619 1.22211 0.413937

CAGE analysis