Hb_001532_060

Information

Type -
Description -
Location Contig1532: 69591-70834
Sequence    

Annotation

kegg
ID rcu:RCOM_1107260
description S-adenosylmethionine-dependent methyltransferase, putative
nr
ID XP_002531495.1
description S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
swissprot
ID Q55EX9
description Putative methyltransferase DDB_G0268948 OS=Dictyostelium discoideum GN=DDB_G0268948 PE=1 SV=2
trembl
ID B9SZS6
description S-adenosylmethionine-dependent methyltransferase, putative OS=Ricinus communis GN=RCOM_1107260 PE=4 SV=1
Gene Ontology
ID GO:0008168
description methyltransferase ddb_g0268948

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13169: 69626-70763
cDNA
(Sanger)
(ID:Location)		 008_F24.ab1: 69650-70004 , 026_G21.ab1: 69650-69999 , 038_C19.ab1: 69650-70004

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001532_060 0.0 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
2 Hb_004703_010 0.0895790521 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
3 Hb_002081_220 0.1383126371 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
4 Hb_001288_020 0.1409161968 - - -
5 Hb_021888_010 0.1480425512 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
6 Hb_000723_050 0.1521480931 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
7 Hb_009767_030 0.1553548974 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
8 Hb_004551_050 0.1592863917 - - PREDICTED: glucose-6-phosphate/phosphate translocator 2, chloroplastic [Jatropha curcas]
9 Hb_022092_050 0.1602243404 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
10 Hb_009070_030 0.1611298471 - - PREDICTED: mechanosensitive ion channel protein 10 [Jatropha curcas]
11 Hb_164300_010 0.16152973 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
12 Hb_006262_030 0.1619273694 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
13 Hb_005730_070 0.164181833 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
14 Hb_001454_290 0.1646507485 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
15 Hb_008554_090 0.1654032489 - - zinc finger protein, putative [Ricinus communis]
16 Hb_002003_030 0.1657436867 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
17 Hb_002110_060 0.1664101409 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
18 Hb_111985_120 0.168227276 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
19 Hb_004525_110 0.1756173025 - - hypothetical protein POPTR_0007s12850g [Populus trichocarpa]
20 Hb_003413_020 0.1767590167 - - -

Gene co-expression network

sample Hb_001532_060 Hb_001532_060 Hb_004703_010 Hb_004703_010 Hb_001532_060--Hb_004703_010 Hb_002081_220 Hb_002081_220 Hb_001532_060--Hb_002081_220 Hb_001288_020 Hb_001288_020 Hb_001532_060--Hb_001288_020 Hb_021888_010 Hb_021888_010 Hb_001532_060--Hb_021888_010 Hb_000723_050 Hb_000723_050 Hb_001532_060--Hb_000723_050 Hb_009767_030 Hb_009767_030 Hb_001532_060--Hb_009767_030 Hb_006262_030 Hb_006262_030 Hb_004703_010--Hb_006262_030 Hb_008080_030 Hb_008080_030 Hb_004703_010--Hb_008080_030 Hb_003413_020 Hb_003413_020 Hb_004703_010--Hb_003413_020 Hb_002110_060 Hb_002110_060 Hb_004703_010--Hb_002110_060 Hb_002157_100 Hb_002157_100 Hb_004703_010--Hb_002157_100 Hb_010053_010 Hb_010053_010 Hb_002081_220--Hb_010053_010 Hb_164300_010 Hb_164300_010 Hb_002081_220--Hb_164300_010 Hb_002081_220--Hb_021888_010 Hb_000101_370 Hb_000101_370 Hb_002081_220--Hb_000101_370 Hb_001158_110 Hb_001158_110 Hb_002081_220--Hb_001158_110 Hb_001288_020--Hb_003413_020 Hb_001288_020--Hb_001158_110 Hb_000086_720 Hb_000086_720 Hb_001288_020--Hb_000086_720 Hb_072997_010 Hb_072997_010 Hb_001288_020--Hb_072997_010 Hb_001005_170 Hb_001005_170 Hb_001288_020--Hb_001005_170 Hb_010598_010 Hb_010598_010 Hb_001288_020--Hb_010598_010 Hb_021888_010--Hb_001158_110 Hb_006573_260 Hb_006573_260 Hb_021888_010--Hb_006573_260 Hb_001002_090 Hb_001002_090 Hb_021888_010--Hb_001002_090 Hb_021888_010--Hb_009767_030 Hb_000187_110 Hb_000187_110 Hb_021888_010--Hb_000187_110 Hb_000340_350 Hb_000340_350 Hb_000723_050--Hb_000340_350 Hb_005730_070 Hb_005730_070 Hb_000723_050--Hb_005730_070 Hb_033312_050 Hb_033312_050 Hb_000723_050--Hb_033312_050 Hb_001454_290 Hb_001454_290 Hb_000723_050--Hb_001454_290 Hb_004551_050 Hb_004551_050 Hb_000723_050--Hb_004551_050 Hb_008554_090 Hb_008554_090 Hb_000723_050--Hb_008554_090 Hb_000696_250 Hb_000696_250 Hb_009767_030--Hb_000696_250 Hb_001252_050 Hb_001252_050 Hb_009767_030--Hb_001252_050 Hb_009767_030--Hb_072997_010 Hb_009767_030--Hb_001002_090 Hb_001776_070 Hb_001776_070 Hb_009767_030--Hb_001776_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 23.5569 99.5653 26.9122 0 0.0552236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07085 0.245671 0.0650099 89.5542 4.33774

CAGE analysis