Hb_001534_020

Information

Type -
Description -
Location Contig1534: 19172-19525
Sequence    

Annotation

kegg
ID rcu:RCOM_0934560
description hypothetical protein
nr
ID XP_002532316.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T247
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0934560 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001534_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001105_080 0.104692867 - - -
3 Hb_005396_140 0.105300195 - - -
4 Hb_140618_010 0.1056586985 - - -
5 Hb_001241_090 0.1056637028 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
6 Hb_052600_010 0.1056824288 - - -
7 Hb_005834_030 0.111674921 - - -
8 Hb_003675_010 0.1181397197 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
9 Hb_000270_820 0.1263793602 - - -
10 Hb_000956_140 0.1377352485 - - -
11 Hb_000510_380 0.1610302212 - - -
12 Hb_000482_130 0.1610339044 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_012543_020 0.1610371869 - - -
14 Hb_185616_010 0.1610424524 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_061463_010 0.1610705348 - - Cucumisin precursor, putative [Ricinus communis]
16 Hb_002130_010 0.1610802377 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
17 Hb_000098_160 0.1611287919 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003052_160 0.1611287919 - - -
19 Hb_000413_310 0.1611383696 - - -
20 Hb_137268_010 0.1611525737 - - -

Gene co-expression network

sample Hb_001534_020 Hb_001534_020 Hb_001105_080 Hb_001105_080 Hb_001534_020--Hb_001105_080 Hb_005396_140 Hb_005396_140 Hb_001534_020--Hb_005396_140 Hb_140618_010 Hb_140618_010 Hb_001534_020--Hb_140618_010 Hb_001241_090 Hb_001241_090 Hb_001534_020--Hb_001241_090 Hb_052600_010 Hb_052600_010 Hb_001534_020--Hb_052600_010 Hb_005834_030 Hb_005834_030 Hb_001534_020--Hb_005834_030 Hb_001105_080--Hb_005396_140 Hb_001105_080--Hb_140618_010 Hb_001105_080--Hb_001241_090 Hb_001105_080--Hb_052600_010 Hb_001105_080--Hb_005834_030 Hb_003675_010 Hb_003675_010 Hb_001105_080--Hb_003675_010 Hb_005396_140--Hb_140618_010 Hb_005396_140--Hb_001241_090 Hb_005396_140--Hb_052600_010 Hb_005396_140--Hb_005834_030 Hb_005396_140--Hb_003675_010 Hb_140618_010--Hb_001241_090 Hb_140618_010--Hb_052600_010 Hb_140618_010--Hb_005834_030 Hb_140618_010--Hb_003675_010 Hb_001241_090--Hb_052600_010 Hb_001241_090--Hb_005834_030 Hb_001241_090--Hb_003675_010 Hb_052600_010--Hb_005834_030 Hb_052600_010--Hb_003675_010 Hb_005834_030--Hb_003675_010 Hb_000270_820 Hb_000270_820 Hb_005834_030--Hb_000270_820
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.80632 1.2029 0 0.0885774 0

CAGE analysis