Hb_001534_070

Information

Type -
Description -
Location Contig1534: 65871-69925
Sequence    

Annotation

kegg
ID egr:104425932
description DEAD-box ATP-dependent RNA helicase 38
nr
ID XP_010037109.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
swissprot
ID Q93ZG7
description DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana GN=RH38 PE=1 SV=2
trembl
ID A0A059A519
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02417 PE=4 SV=1
Gene Ontology
ID GO:0044464
description dead-box atp-dependent rna helicase 38

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13189: 68586-69644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001534_070 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
2 Hb_000120_570 0.1063654738 - - Mlo protein [Hevea brasiliensis]
3 Hb_012340_020 0.1101580552 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
4 Hb_000720_070 0.1109264728 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
5 Hb_010068_030 0.1281019722 - - aconitase, putative [Ricinus communis]
6 Hb_002918_310 0.1332821915 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
7 Hb_006501_060 0.134299531 - - PREDICTED: lachrymatory-factor synthase-like [Jatropha curcas]
8 Hb_000685_080 0.135861652 - - protein binding protein, putative [Ricinus communis]
9 Hb_000152_560 0.136420536 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
10 Hb_000212_130 0.1381023254 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000580_130 0.1392043931 - - hypothetical protein JCGZ_14541 [Jatropha curcas]
12 Hb_000040_050 0.140805383 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
13 Hb_004712_110 0.1440528559 - - 30S ribosomal protein S10, putative [Ricinus communis]
14 Hb_006631_010 0.1443780752 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
15 Hb_003688_200 0.1459492603 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009558_040 0.1462102512 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
17 Hb_003125_060 0.1464423377 - - PREDICTED: snurportin-1 [Jatropha curcas]
18 Hb_000608_340 0.147002923 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
19 Hb_000619_070 0.1478964894 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
20 Hb_000755_080 0.1489985449 - - hypothetical protein RCOM_1016710 [Ricinus communis]

Gene co-expression network

sample Hb_001534_070 Hb_001534_070 Hb_000120_570 Hb_000120_570 Hb_001534_070--Hb_000120_570 Hb_012340_020 Hb_012340_020 Hb_001534_070--Hb_012340_020 Hb_000720_070 Hb_000720_070 Hb_001534_070--Hb_000720_070 Hb_010068_030 Hb_010068_030 Hb_001534_070--Hb_010068_030 Hb_002918_310 Hb_002918_310 Hb_001534_070--Hb_002918_310 Hb_006501_060 Hb_006501_060 Hb_001534_070--Hb_006501_060 Hb_001473_080 Hb_001473_080 Hb_000120_570--Hb_001473_080 Hb_001922_130 Hb_001922_130 Hb_000120_570--Hb_001922_130 Hb_009178_020 Hb_009178_020 Hb_000120_570--Hb_009178_020 Hb_000685_080 Hb_000685_080 Hb_000120_570--Hb_000685_080 Hb_004374_150 Hb_004374_150 Hb_000120_570--Hb_004374_150 Hb_002374_440 Hb_002374_440 Hb_012340_020--Hb_002374_440 Hb_000206_130 Hb_000206_130 Hb_012340_020--Hb_000206_130 Hb_012340_020--Hb_010068_030 Hb_012340_020--Hb_002918_310 Hb_003688_200 Hb_003688_200 Hb_012340_020--Hb_003688_200 Hb_002965_030 Hb_002965_030 Hb_000720_070--Hb_002965_030 Hb_013394_060 Hb_013394_060 Hb_000720_070--Hb_013394_060 Hb_005725_020 Hb_005725_020 Hb_000720_070--Hb_005725_020 Hb_027420_050 Hb_027420_050 Hb_000720_070--Hb_027420_050 Hb_002999_060 Hb_002999_060 Hb_000720_070--Hb_002999_060 Hb_003097_190 Hb_003097_190 Hb_010068_030--Hb_003097_190 Hb_000152_560 Hb_000152_560 Hb_010068_030--Hb_000152_560 Hb_000422_140 Hb_000422_140 Hb_010068_030--Hb_000422_140 Hb_002890_030 Hb_002890_030 Hb_010068_030--Hb_002890_030 Hb_002499_070 Hb_002499_070 Hb_010068_030--Hb_002499_070 Hb_000258_130 Hb_000258_130 Hb_010068_030--Hb_000258_130 Hb_002918_310--Hb_000720_070 Hb_002918_310--Hb_002965_030 Hb_035947_010 Hb_035947_010 Hb_002918_310--Hb_035947_010 Hb_002918_310--Hb_000152_560 Hb_006501_060--Hb_000120_570 Hb_002609_010 Hb_002609_010 Hb_006501_060--Hb_002609_010 Hb_001247_230 Hb_001247_230 Hb_006501_060--Hb_001247_230 Hb_010883_080 Hb_010883_080 Hb_006501_060--Hb_010883_080 Hb_000116_570 Hb_000116_570 Hb_006501_060--Hb_000116_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.8274 39.2762 13.94 8.18777 108.106 54.3392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.035 10.6453 14.5486 8.97148 5.66906

CAGE analysis