Hb_001534_110

Information

Type -
Description -
Location Contig1534: 80745-82652
Sequence    

Annotation

kegg
ID rcu:RCOM_1353020
description hypothetical protein
nr
ID XP_002519436.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S0B7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1353020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001534_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003605_120 0.2574568324 - - hypothetical protein POPTR_0013s12060g [Populus trichocarpa]
3 Hb_001864_080 0.2858968305 - - PREDICTED: uncharacterized protein LOC105649405 [Jatropha curcas]
4 Hb_000808_110 0.2933711852 - - PREDICTED: uncharacterized protein LOC105647448 isoform X4 [Jatropha curcas]
5 Hb_005479_010 0.3007209364 - - PREDICTED: uncharacterized protein LOC105111002 [Populus euphratica]
6 Hb_000116_400 0.3037617681 - - protein with unknown function [Ricinus communis]
7 Hb_053281_010 0.3155114537 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
8 Hb_002820_150 0.3167618069 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000031_100 0.3192712941 - - amine oxidase, putative [Ricinus communis]
10 Hb_001793_050 0.3205359547 - - PREDICTED: uncharacterized protein LOC105632663 [Jatropha curcas]
11 Hb_172632_130 0.3234057238 - - hypothetical protein JCGZ_22584 [Jatropha curcas]
12 Hb_000538_130 0.3257465195 - - phytoene synthase 2 [Manihot esculenta]
13 Hb_001195_130 0.326178751 - - conserved hypothetical protein [Ricinus communis]
14 Hb_019837_020 0.3266483938 - - -
15 Hb_000256_080 0.3267911808 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
16 Hb_011485_080 0.3276947734 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
17 Hb_010098_060 0.3286489366 - - PREDICTED: BTB/POZ domain-containing protein At5g17580 [Jatropha curcas]
18 Hb_003086_040 0.329155065 - - PREDICTED: uncharacterized protein LOC105635780 isoform X2 [Jatropha curcas]
19 Hb_001758_110 0.3294282268 - - Ran GTPase binding protein, putative [Ricinus communis]
20 Hb_000836_350 0.3294997951 - - PREDICTED: uncharacterized protein LOC105642938 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001534_110 Hb_001534_110 Hb_003605_120 Hb_003605_120 Hb_001534_110--Hb_003605_120 Hb_001864_080 Hb_001864_080 Hb_001534_110--Hb_001864_080 Hb_000808_110 Hb_000808_110 Hb_001534_110--Hb_000808_110 Hb_005479_010 Hb_005479_010 Hb_001534_110--Hb_005479_010 Hb_000116_400 Hb_000116_400 Hb_001534_110--Hb_000116_400 Hb_053281_010 Hb_053281_010 Hb_001534_110--Hb_053281_010 Hb_000390_020 Hb_000390_020 Hb_003605_120--Hb_000390_020 Hb_025905_010 Hb_025905_010 Hb_003605_120--Hb_025905_010 Hb_001414_050 Hb_001414_050 Hb_003605_120--Hb_001414_050 Hb_006935_040 Hb_006935_040 Hb_003605_120--Hb_006935_040 Hb_067197_030 Hb_067197_030 Hb_003605_120--Hb_067197_030 Hb_001250_040 Hb_001250_040 Hb_003605_120--Hb_001250_040 Hb_000291_290 Hb_000291_290 Hb_001864_080--Hb_000291_290 Hb_000256_080 Hb_000256_080 Hb_001864_080--Hb_000256_080 Hb_000962_070 Hb_000962_070 Hb_001864_080--Hb_000962_070 Hb_000069_360 Hb_000069_360 Hb_001864_080--Hb_000069_360 Hb_000390_190 Hb_000390_190 Hb_001864_080--Hb_000390_190 Hb_000096_190 Hb_000096_190 Hb_001864_080--Hb_000096_190 Hb_000836_350 Hb_000836_350 Hb_000808_110--Hb_000836_350 Hb_008494_030 Hb_008494_030 Hb_000808_110--Hb_008494_030 Hb_006569_040 Hb_006569_040 Hb_000808_110--Hb_006569_040 Hb_002107_050 Hb_002107_050 Hb_000808_110--Hb_002107_050 Hb_001623_490 Hb_001623_490 Hb_000808_110--Hb_001623_490 Hb_000331_340 Hb_000331_340 Hb_000808_110--Hb_000331_340 Hb_001793_050 Hb_001793_050 Hb_005479_010--Hb_001793_050 Hb_002097_100 Hb_002097_100 Hb_005479_010--Hb_002097_100 Hb_000260_590 Hb_000260_590 Hb_005479_010--Hb_000260_590 Hb_001976_060 Hb_001976_060 Hb_005479_010--Hb_001976_060 Hb_001623_080 Hb_001623_080 Hb_005479_010--Hb_001623_080 Hb_001195_130 Hb_001195_130 Hb_005479_010--Hb_001195_130 Hb_000934_110 Hb_000934_110 Hb_000116_400--Hb_000934_110 Hb_005063_080 Hb_005063_080 Hb_000116_400--Hb_005063_080 Hb_000116_400--Hb_001623_080 Hb_002320_090 Hb_002320_090 Hb_000116_400--Hb_002320_090 Hb_000200_350 Hb_000200_350 Hb_000116_400--Hb_000200_350 Hb_000964_170 Hb_000964_170 Hb_000116_400--Hb_000964_170 Hb_010020_010 Hb_010020_010 Hb_053281_010--Hb_010020_010 Hb_003676_030 Hb_003676_030 Hb_053281_010--Hb_003676_030 Hb_158253_010 Hb_158253_010 Hb_053281_010--Hb_158253_010 Hb_000260_370 Hb_000260_370 Hb_053281_010--Hb_000260_370 Hb_006721_070 Hb_006721_070 Hb_053281_010--Hb_006721_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0686011 0.0288723 0.108457 0.134427 0.0689441 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.062243 0 0 0.123337

CAGE analysis