Hb_001534_120

Information

Type -
Description -
Location Contig1534: 82984-86114
Sequence    

Annotation

kegg
ID cic:CICLE_v10009355mg
description hypothetical protein
nr
ID XP_012442782.1
description PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
swissprot
ID Q3EBL9
description Vacuolar protein-sorting-associated protein 37 homolog 2 OS=Arabidopsis thaliana GN=VPS37-2 PE=1 SV=1
trembl
ID A0A0D2U000
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G411000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13190: 82991-86271 , PASA_asmbl_13191: 86027-86271 , PASA_asmbl_13192: 84803-85204
cDNA
(Sanger)
(ID:Location)		 026_N16.ab1: 83125-86151 , 028_P03.ab1: 83044-86151

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001534_120 0.0 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
2 Hb_001195_480 0.050157679 - - cop9 complex subunit, putative [Ricinus communis]
3 Hb_007477_070 0.0548770487 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
4 Hb_010921_010 0.0574479294 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
5 Hb_002534_150 0.063859685 - - catalytic, putative [Ricinus communis]
6 Hb_001512_060 0.0641796432 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
7 Hb_000362_200 0.0650191033 - - exonuclease family protein [Populus trichocarpa]
8 Hb_005697_060 0.0679002255 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
9 Hb_000656_240 0.0698290032 - - proteasome subunit alpha type, putative [Ricinus communis]
10 Hb_004116_190 0.0707381691 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
11 Hb_008554_060 0.0741720373 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
12 Hb_004116_060 0.0753075473 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
13 Hb_024071_020 0.0756054743 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
14 Hb_025645_010 0.0757482819 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
15 Hb_000771_120 0.0757827957 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
16 Hb_000286_070 0.0761162798 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
17 Hb_001662_070 0.0769333402 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
18 Hb_000815_320 0.077399511 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
19 Hb_007423_040 0.0774022719 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
20 Hb_002811_260 0.0814840831 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]

Gene co-expression network

sample Hb_001534_120 Hb_001534_120 Hb_001195_480 Hb_001195_480 Hb_001534_120--Hb_001195_480 Hb_007477_070 Hb_007477_070 Hb_001534_120--Hb_007477_070 Hb_010921_010 Hb_010921_010 Hb_001534_120--Hb_010921_010 Hb_002534_150 Hb_002534_150 Hb_001534_120--Hb_002534_150 Hb_001512_060 Hb_001512_060 Hb_001534_120--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_001534_120--Hb_000362_200 Hb_000656_240 Hb_000656_240 Hb_001195_480--Hb_000656_240 Hb_000815_320 Hb_000815_320 Hb_001195_480--Hb_000815_320 Hb_000529_030 Hb_000529_030 Hb_001195_480--Hb_000529_030 Hb_004453_170 Hb_004453_170 Hb_001195_480--Hb_004453_170 Hb_004096_090 Hb_004096_090 Hb_001195_480--Hb_004096_090 Hb_025645_010 Hb_025645_010 Hb_007477_070--Hb_025645_010 Hb_007477_070--Hb_001512_060 Hb_001662_070 Hb_001662_070 Hb_007477_070--Hb_001662_070 Hb_000771_120 Hb_000771_120 Hb_007477_070--Hb_000771_120 Hb_007576_040 Hb_007576_040 Hb_007477_070--Hb_007576_040 Hb_010921_010--Hb_001512_060 Hb_005993_040 Hb_005993_040 Hb_010921_010--Hb_005993_040 Hb_007154_020 Hb_007154_020 Hb_010921_010--Hb_007154_020 Hb_002686_020 Hb_002686_020 Hb_010921_010--Hb_002686_020 Hb_000109_090 Hb_000109_090 Hb_010921_010--Hb_000109_090 Hb_001828_060 Hb_001828_060 Hb_002534_150--Hb_001828_060 Hb_005725_250 Hb_005725_250 Hb_002534_150--Hb_005725_250 Hb_000059_370 Hb_000059_370 Hb_002534_150--Hb_000059_370 Hb_005697_060 Hb_005697_060 Hb_002534_150--Hb_005697_060 Hb_004116_190 Hb_004116_190 Hb_002534_150--Hb_004116_190 Hb_001512_060--Hb_000362_200 Hb_001512_060--Hb_007154_020 Hb_002346_020 Hb_002346_020 Hb_001512_060--Hb_002346_020 Hb_009421_020 Hb_009421_020 Hb_000362_200--Hb_009421_020 Hb_005186_050 Hb_005186_050 Hb_000362_200--Hb_005186_050 Hb_004093_090 Hb_004093_090 Hb_000362_200--Hb_004093_090 Hb_000362_200--Hb_007477_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.7635 14.3671 27.2101 17.095 27.4758 21.987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.533 44.4217 20.7021 19.5143 12.4846

CAGE analysis