Hb_001534_130

Information

Type -
Description -
Location Contig1534: 86976-90170
Sequence    

Annotation

kegg
ID pop:POPTR_0006s12090g
description hypothetical protein
nr
ID XP_012082500.1
description PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
swissprot
ID Q67Y83
description Serine carboxypeptidase-like 51 OS=Arabidopsis thaliana GN=SCPL51 PE=2 SV=2
trembl
ID U5GA83
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s12090g PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 51

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001534_130 0.0 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
2 Hb_005833_010 0.0760111886 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
3 Hb_126714_010 0.0760259172 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
4 Hb_006588_140 0.0765431313 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
5 Hb_000358_260 0.084798815 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
6 Hb_010577_020 0.0857145325 - - -
7 Hb_056506_040 0.0967695255 - - -
8 Hb_163566_010 0.0977590952 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
9 Hb_000915_170 0.0980156476 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
10 Hb_006816_380 0.1013811822 - - PREDICTED: kinesin-4-like [Jatropha curcas]
11 Hb_007904_150 0.1060983444 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
12 Hb_000111_490 0.1065415911 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003723_050 0.1070241684 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001426_020 0.1104133485 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
15 Hb_024723_010 0.1160545446 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
16 Hb_000487_080 0.1161184038 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
17 Hb_001981_050 0.116331623 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
18 Hb_185811_010 0.1169226516 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
19 Hb_009225_060 0.1184455912 - - PREDICTED: myosin heavy chain kinase B-like [Populus euphratica]
20 Hb_002377_010 0.1202077264 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001534_130 Hb_001534_130 Hb_005833_010 Hb_005833_010 Hb_001534_130--Hb_005833_010 Hb_126714_010 Hb_126714_010 Hb_001534_130--Hb_126714_010 Hb_006588_140 Hb_006588_140 Hb_001534_130--Hb_006588_140 Hb_000358_260 Hb_000358_260 Hb_001534_130--Hb_000358_260 Hb_010577_020 Hb_010577_020 Hb_001534_130--Hb_010577_020 Hb_056506_040 Hb_056506_040 Hb_001534_130--Hb_056506_040 Hb_005833_010--Hb_126714_010 Hb_163566_010 Hb_163566_010 Hb_005833_010--Hb_163566_010 Hb_005833_010--Hb_006588_140 Hb_005833_010--Hb_010577_020 Hb_005833_010--Hb_000358_260 Hb_001426_020 Hb_001426_020 Hb_005833_010--Hb_001426_020 Hb_126714_010--Hb_006588_140 Hb_009225_060 Hb_009225_060 Hb_126714_010--Hb_009225_060 Hb_126714_010--Hb_001426_020 Hb_126714_010--Hb_163566_010 Hb_126714_010--Hb_000358_260 Hb_006588_140--Hb_009225_060 Hb_006588_140--Hb_001426_020 Hb_006588_140--Hb_000358_260 Hb_000358_260--Hb_010577_020 Hb_000915_170 Hb_000915_170 Hb_000358_260--Hb_000915_170 Hb_000358_260--Hb_056506_040 Hb_000928_030 Hb_000928_030 Hb_000358_260--Hb_000928_030 Hb_006816_380 Hb_006816_380 Hb_000358_260--Hb_006816_380 Hb_010577_020--Hb_056506_040 Hb_011549_040 Hb_011549_040 Hb_010577_020--Hb_011549_040 Hb_068804_190 Hb_068804_190 Hb_010577_020--Hb_068804_190 Hb_000111_490 Hb_000111_490 Hb_010577_020--Hb_000111_490 Hb_056506_040--Hb_000111_490 Hb_056506_040--Hb_068804_190 Hb_024723_010 Hb_024723_010 Hb_056506_040--Hb_024723_010 Hb_005532_080 Hb_005532_080 Hb_056506_040--Hb_005532_080 Hb_056506_040--Hb_011549_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.733523 1.02818 0 0.0266795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.909077

CAGE analysis