Hb_001534_140

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig1534: 101921-103202
Sequence    

Annotation

kegg
ID rcu:RCOM_1352570
description protein with unknown function
nr
ID XP_012082501.1
description PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
swissprot
ID P0CB19
description Uncharacterized protein At3g50808 OS=Arabidopsis thaliana GN=At3g50808 PE=4 SV=1
trembl
ID B9S0B2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1352570 PE=4 SV=1
Gene Ontology
ID GO:0005622
description PREDICTED: uncharacterized protein LOC105642310

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001534_140 0.0 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
2 Hb_010142_060 0.0626066492 - - Blue copper protein precursor, putative [Ricinus communis]
3 Hb_000368_050 0.0726012536 - - beta-galactosidase, putative [Ricinus communis]
4 Hb_005332_160 0.0730042309 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
5 Hb_138585_010 0.0795403319 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
6 Hb_169077_030 0.0822482338 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
7 Hb_012395_060 0.0863319594 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
8 Hb_004531_160 0.0927161968 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
9 Hb_000676_230 0.0929983691 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
10 Hb_047612_010 0.0952867904 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
11 Hb_009252_070 0.099622596 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
12 Hb_004804_010 0.1038123084 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
13 Hb_007760_020 0.1046354823 - - PREDICTED: expansin-A1 [Populus euphratica]
14 Hb_003376_140 0.1050903731 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
15 Hb_001268_290 0.1083102202 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
16 Hb_001410_080 0.1084646386 - - ring finger protein, putative [Ricinus communis]
17 Hb_001079_050 0.1093925994 - - Calmodulin, putative [Ricinus communis]
18 Hb_006386_010 0.1104141653 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
19 Hb_182869_010 0.1119412141 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_001584_270 0.1123382361 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001534_140 Hb_001534_140 Hb_010142_060 Hb_010142_060 Hb_001534_140--Hb_010142_060 Hb_000368_050 Hb_000368_050 Hb_001534_140--Hb_000368_050 Hb_005332_160 Hb_005332_160 Hb_001534_140--Hb_005332_160 Hb_138585_010 Hb_138585_010 Hb_001534_140--Hb_138585_010 Hb_169077_030 Hb_169077_030 Hb_001534_140--Hb_169077_030 Hb_012395_060 Hb_012395_060 Hb_001534_140--Hb_012395_060 Hb_004531_160 Hb_004531_160 Hb_010142_060--Hb_004531_160 Hb_000676_230 Hb_000676_230 Hb_010142_060--Hb_000676_230 Hb_010142_060--Hb_000368_050 Hb_004032_290 Hb_004032_290 Hb_010142_060--Hb_004032_290 Hb_000395_310 Hb_000395_310 Hb_010142_060--Hb_000395_310 Hb_182869_010 Hb_182869_010 Hb_000368_050--Hb_182869_010 Hb_000368_050--Hb_000676_230 Hb_047612_010 Hb_047612_010 Hb_000368_050--Hb_047612_010 Hb_009252_070 Hb_009252_070 Hb_000368_050--Hb_009252_070 Hb_003607_090 Hb_003607_090 Hb_005332_160--Hb_003607_090 Hb_000910_030 Hb_000910_030 Hb_005332_160--Hb_000910_030 Hb_001410_080 Hb_001410_080 Hb_005332_160--Hb_001410_080 Hb_005332_160--Hb_169077_030 Hb_141194_020 Hb_141194_020 Hb_005332_160--Hb_141194_020 Hb_004804_010 Hb_004804_010 Hb_138585_010--Hb_004804_010 Hb_006846_040 Hb_006846_040 Hb_138585_010--Hb_006846_040 Hb_000417_210 Hb_000417_210 Hb_138585_010--Hb_000417_210 Hb_138585_010--Hb_009252_070 Hb_000903_040 Hb_000903_040 Hb_138585_010--Hb_000903_040 Hb_007370_010 Hb_007370_010 Hb_169077_030--Hb_007370_010 Hb_169077_030--Hb_012395_060 Hb_000152_570 Hb_000152_570 Hb_169077_030--Hb_000152_570 Hb_006154_010 Hb_006154_010 Hb_169077_030--Hb_006154_010 Hb_000193_070 Hb_000193_070 Hb_169077_030--Hb_000193_070 Hb_012395_060--Hb_004804_010 Hb_001269_660 Hb_001269_660 Hb_012395_060--Hb_001269_660 Hb_012395_060--Hb_138585_010 Hb_012395_060--Hb_000152_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.150287 0.862911 4.15742 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.404928 1.85006

CAGE analysis