Hb_001534_150

Information

Type -
Description -
Location Contig1534: 107170-108861
Sequence    

Annotation

kegg
ID rcu:RCOM_1352550
description Uracil permease, putative
nr
ID XP_012082503.1
description PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
swissprot
ID Q9LZD0
description Purine-uracil permease NCS1 OS=Arabidopsis thaliana GN=NCS1 PE=1 SV=1
trembl
ID B9S0B0
description Uracil permease, putative OS=Ricinus communis GN=RCOM_1352550 PE=4 SV=1
Gene Ontology
ID GO:0009526
description uncharacterized permease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13193: 107352-108840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001534_150 0.0 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
2 Hb_000027_060 0.0667669711 - - hypothetical protein POPTR_0004s07470g [Populus trichocarpa]
3 Hb_030370_070 0.0943095236 - - ATP binding protein, putative [Ricinus communis]
4 Hb_107552_020 0.0996723252 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
5 Hb_000705_130 0.1052950388 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000331_710 0.106623851 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_008550_030 0.1224869851 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
8 Hb_002097_210 0.1244022314 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002239_020 0.1256118358 - - MLO, putative [Theobroma cacao]
10 Hb_004945_050 0.1257808235 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
11 Hb_010921_060 0.1301178828 - - ATP binding protein, putative [Ricinus communis]
12 Hb_001677_120 0.130896686 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
13 Hb_015882_020 0.1311859922 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
14 Hb_008040_060 0.1326409538 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
15 Hb_033312_090 0.1344813176 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
16 Hb_003914_050 0.1347857295 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
17 Hb_002341_040 0.1351644061 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
18 Hb_000347_380 0.135706752 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_013720_010 0.1366166648 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
20 Hb_000522_130 0.1369790238 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]

Gene co-expression network

sample Hb_001534_150 Hb_001534_150 Hb_000027_060 Hb_000027_060 Hb_001534_150--Hb_000027_060 Hb_030370_070 Hb_030370_070 Hb_001534_150--Hb_030370_070 Hb_107552_020 Hb_107552_020 Hb_001534_150--Hb_107552_020 Hb_000705_130 Hb_000705_130 Hb_001534_150--Hb_000705_130 Hb_000331_710 Hb_000331_710 Hb_001534_150--Hb_000331_710 Hb_008550_030 Hb_008550_030 Hb_001534_150--Hb_008550_030 Hb_000027_060--Hb_000331_710 Hb_013720_010 Hb_013720_010 Hb_000027_060--Hb_013720_010 Hb_000027_060--Hb_000705_130 Hb_008040_060 Hb_008040_060 Hb_000027_060--Hb_008040_060 Hb_003914_050 Hb_003914_050 Hb_000027_060--Hb_003914_050 Hb_000029_180 Hb_000029_180 Hb_030370_070--Hb_000029_180 Hb_000465_380 Hb_000465_380 Hb_030370_070--Hb_000465_380 Hb_030370_070--Hb_008550_030 Hb_001989_080 Hb_001989_080 Hb_030370_070--Hb_001989_080 Hb_030370_070--Hb_107552_020 Hb_000347_380 Hb_000347_380 Hb_107552_020--Hb_000347_380 Hb_019026_040 Hb_019026_040 Hb_107552_020--Hb_019026_040 Hb_003811_030 Hb_003811_030 Hb_107552_020--Hb_003811_030 Hb_107552_020--Hb_000027_060 Hb_015882_020 Hb_015882_020 Hb_000705_130--Hb_015882_020 Hb_000705_130--Hb_000331_710 Hb_000705_130--Hb_008040_060 Hb_000522_130 Hb_000522_130 Hb_000705_130--Hb_000522_130 Hb_000331_710--Hb_013720_010 Hb_000247_150 Hb_000247_150 Hb_000331_710--Hb_000247_150 Hb_004712_140 Hb_004712_140 Hb_000331_710--Hb_004712_140 Hb_006698_020 Hb_006698_020 Hb_000331_710--Hb_006698_020 Hb_002097_210 Hb_002097_210 Hb_008550_030--Hb_002097_210 Hb_004945_050 Hb_004945_050 Hb_008550_030--Hb_004945_050 Hb_002267_030 Hb_002267_030 Hb_008550_030--Hb_002267_030 Hb_002341_040 Hb_002341_040 Hb_008550_030--Hb_002341_040 Hb_000060_100 Hb_000060_100 Hb_008550_030--Hb_000060_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.385247 44.0058 9.02082 8.75231 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0816544 0.0214145 0 5.52198 13.1881

CAGE analysis