Hb_001538_010

Information

Type -
Description -
Location Contig1538: 25069-26073
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001538_010 0.0 - - -
2 Hb_001141_330 0.087850721 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
3 Hb_002007_270 0.0931125096 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g05340-like [Jatropha curcas]
4 Hb_001936_050 0.0936310228 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
5 Hb_003297_030 0.0946253011 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
6 Hb_000421_260 0.0947978922 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
7 Hb_000803_150 0.0972261799 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
8 Hb_000977_070 0.0998544851 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
9 Hb_005839_120 0.1030292109 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
10 Hb_002890_340 0.1042949623 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
11 Hb_185467_020 0.1043692103 - - Cucumisin precursor, putative [Ricinus communis]
12 Hb_002026_100 0.1048936099 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
13 Hb_001488_330 0.105229721 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
14 Hb_000490_030 0.1061138207 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
15 Hb_000500_040 0.1066571803 - - conserved hypothetical protein [Ricinus communis]
16 Hb_013405_050 0.1067300221 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
17 Hb_004048_090 0.106977255 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Jatropha curcas]
18 Hb_002810_020 0.1089722185 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
19 Hb_000776_110 0.1099146519 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
20 Hb_000576_030 0.1101748569 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540 [Jatropha curcas]

Gene co-expression network

sample Hb_001538_010 Hb_001538_010 Hb_001141_330 Hb_001141_330 Hb_001538_010--Hb_001141_330 Hb_002007_270 Hb_002007_270 Hb_001538_010--Hb_002007_270 Hb_001936_050 Hb_001936_050 Hb_001538_010--Hb_001936_050 Hb_003297_030 Hb_003297_030 Hb_001538_010--Hb_003297_030 Hb_000421_260 Hb_000421_260 Hb_001538_010--Hb_000421_260 Hb_000803_150 Hb_000803_150 Hb_001538_010--Hb_000803_150 Hb_002026_110 Hb_002026_110 Hb_001141_330--Hb_002026_110 Hb_000977_070 Hb_000977_070 Hb_001141_330--Hb_000977_070 Hb_004324_280 Hb_004324_280 Hb_001141_330--Hb_004324_280 Hb_005307_030 Hb_005307_030 Hb_001141_330--Hb_005307_030 Hb_000236_100 Hb_000236_100 Hb_001141_330--Hb_000236_100 Hb_000340_510 Hb_000340_510 Hb_001141_330--Hb_000340_510 Hb_004852_030 Hb_004852_030 Hb_002007_270--Hb_004852_030 Hb_026048_100 Hb_026048_100 Hb_002007_270--Hb_026048_100 Hb_000622_310 Hb_000622_310 Hb_002007_270--Hb_000622_310 Hb_002007_270--Hb_003297_030 Hb_000172_400 Hb_000172_400 Hb_002007_270--Hb_000172_400 Hb_000490_030 Hb_000490_030 Hb_001936_050--Hb_000490_030 Hb_002874_070 Hb_002874_070 Hb_001936_050--Hb_002874_070 Hb_000358_080 Hb_000358_080 Hb_001936_050--Hb_000358_080 Hb_002818_040 Hb_002818_040 Hb_001936_050--Hb_002818_040 Hb_011496_010 Hb_011496_010 Hb_001936_050--Hb_011496_010 Hb_001936_050--Hb_000340_510 Hb_010863_080 Hb_010863_080 Hb_003297_030--Hb_010863_080 Hb_003609_040 Hb_003609_040 Hb_003297_030--Hb_003609_040 Hb_001635_100 Hb_001635_100 Hb_003297_030--Hb_001635_100 Hb_098993_010 Hb_098993_010 Hb_003297_030--Hb_098993_010 Hb_000179_210 Hb_000179_210 Hb_003297_030--Hb_000179_210 Hb_000030_010 Hb_000030_010 Hb_003297_030--Hb_000030_010 Hb_002890_340 Hb_002890_340 Hb_000421_260--Hb_002890_340 Hb_001720_050 Hb_001720_050 Hb_000421_260--Hb_001720_050 Hb_007951_050 Hb_007951_050 Hb_000421_260--Hb_007951_050 Hb_005062_070 Hb_005062_070 Hb_000421_260--Hb_005062_070 Hb_004600_040 Hb_004600_040 Hb_000421_260--Hb_004600_040 Hb_009111_050 Hb_009111_050 Hb_000421_260--Hb_009111_050 Hb_001214_130 Hb_001214_130 Hb_000803_150--Hb_001214_130 Hb_000162_090 Hb_000162_090 Hb_000803_150--Hb_000162_090 Hb_000749_150 Hb_000749_150 Hb_000803_150--Hb_000749_150 Hb_041091_010 Hb_041091_010 Hb_000803_150--Hb_041091_010 Hb_003642_060 Hb_003642_060 Hb_000803_150--Hb_003642_060 Hb_185467_020 Hb_185467_020 Hb_000803_150--Hb_185467_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.80669 2.13544 0.661147 0.716256 4.22665 5.15108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4616 3.63658 4.59293 1.34564 1.08715

CAGE analysis