Hb_001538_020

Information

Type -
Description -
Location Contig1538: 28134-31299
Sequence    

Annotation

kegg
ID vvi:104877351
description uncharacterized LOC104877351
nr
ID XP_012066610.1
description PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A5C021
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017696 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13225: 27977-28705 , PASA_asmbl_13226: 28902-29308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001538_020 0.0 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
2 Hb_000417_020 0.1073511475 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
3 Hb_001269_520 0.1186419385 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
4 Hb_000251_050 0.1473967871 - - hypothetical protein JCGZ_21678 [Jatropha curcas]
5 Hb_002099_060 0.1512726888 - - Protein AFR, putative [Ricinus communis]
6 Hb_000714_120 0.1624909514 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
7 Hb_002110_090 0.1626125422 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
8 Hb_005724_040 0.1669119152 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
9 Hb_000181_230 0.1680395057 - - copper ion binding protein, putative [Ricinus communis]
10 Hb_000438_020 0.16856535 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
11 Hb_001951_070 0.1698906611 - - putative protein [Arabidopsis thaliana]
12 Hb_000107_550 0.1714561363 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
13 Hb_003177_090 0.1788947073 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
14 Hb_000418_150 0.181351514 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000270_710 0.1835408092 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
16 Hb_003702_070 0.1835913971 - - unnamed protein product [Vitis vinifera]
17 Hb_001195_250 0.1875415376 - - lrr receptor protein kinase, putative [Ricinus communis]
18 Hb_001221_390 0.1875916133 - - Phospholipase C 4 precursor, putative [Ricinus communis]
19 Hb_167775_010 0.1882475167 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_006040_170 0.1896100453 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]

Gene co-expression network

sample Hb_001538_020 Hb_001538_020 Hb_000417_020 Hb_000417_020 Hb_001538_020--Hb_000417_020 Hb_001269_520 Hb_001269_520 Hb_001538_020--Hb_001269_520 Hb_000251_050 Hb_000251_050 Hb_001538_020--Hb_000251_050 Hb_002099_060 Hb_002099_060 Hb_001538_020--Hb_002099_060 Hb_000714_120 Hb_000714_120 Hb_001538_020--Hb_000714_120 Hb_002110_090 Hb_002110_090 Hb_001538_020--Hb_002110_090 Hb_000417_020--Hb_001269_520 Hb_000417_020--Hb_000251_050 Hb_003702_070 Hb_003702_070 Hb_000417_020--Hb_003702_070 Hb_000071_160 Hb_000071_160 Hb_000417_020--Hb_000071_160 Hb_002320_090 Hb_002320_090 Hb_000417_020--Hb_002320_090 Hb_001269_520--Hb_000251_050 Hb_001269_520--Hb_002110_090 Hb_001195_250 Hb_001195_250 Hb_001269_520--Hb_001195_250 Hb_000270_710 Hb_000270_710 Hb_001269_520--Hb_000270_710 Hb_000251_050--Hb_002110_090 Hb_049293_010 Hb_049293_010 Hb_000251_050--Hb_049293_010 Hb_000251_050--Hb_002099_060 Hb_000251_050--Hb_001195_250 Hb_000418_150 Hb_000418_150 Hb_000251_050--Hb_000418_150 Hb_000438_020 Hb_000438_020 Hb_002099_060--Hb_000438_020 Hb_029748_020 Hb_029748_020 Hb_002099_060--Hb_029748_020 Hb_005724_040 Hb_005724_040 Hb_002099_060--Hb_005724_040 Hb_004864_020 Hb_004864_020 Hb_002099_060--Hb_004864_020 Hb_000181_230 Hb_000181_230 Hb_002099_060--Hb_000181_230 Hb_002099_060--Hb_000418_150 Hb_000714_120--Hb_004864_020 Hb_000757_020 Hb_000757_020 Hb_000714_120--Hb_000757_020 Hb_003177_090 Hb_003177_090 Hb_000714_120--Hb_003177_090 Hb_000714_120--Hb_002099_060 Hb_000714_120--Hb_002110_090 Hb_000714_120--Hb_000418_150 Hb_002110_090--Hb_003177_090 Hb_000107_550 Hb_000107_550 Hb_002110_090--Hb_000107_550 Hb_002110_090--Hb_000181_230 Hb_002110_090--Hb_002099_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.193259 0.40426 0.362832 0.804399 0.165131 0.0569769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.507369 0.821499

CAGE analysis