Hb_001538_080

Information

Type -
Description -
Location Contig1538: 204194-212102
Sequence    

Annotation

kegg
ID rcu:RCOM_0174830
description hypothetical protein
nr
ID XP_012093104.1
description PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
swissprot
ID Q8GXD9
description Protein SNOWY COTYLEDON 3 OS=Arabidopsis thaliana GN=SCO3 PE=1 SV=1
trembl
ID A0A067LB61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16311 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13232: 204052-206516 , PASA_asmbl_13234: 208702-210902 , PASA_asmbl_13235: 211028-211297 , PASA_asmbl_13236: 211511-211684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001538_080 0.0 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
2 Hb_000103_130 0.0889978792 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
3 Hb_001210_060 0.1041441038 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
4 Hb_097335_010 0.1120270326 - - abhydrolase domain containing, putative [Ricinus communis]
5 Hb_027472_060 0.1135407853 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
6 Hb_005730_060 0.1171122297 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
7 Hb_000235_040 0.1180937479 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X1 [Populus euphratica]
8 Hb_003835_080 0.1191694746 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
9 Hb_022693_010 0.1234507446 - - pectin acetylesterase, putative [Ricinus communis]
10 Hb_029879_150 0.1249492574 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
11 Hb_002613_040 0.1314923345 - - phosphate translocator-related family protein [Populus trichocarpa]
12 Hb_005295_020 0.1317508415 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
13 Hb_000005_370 0.131801662 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
14 Hb_001913_040 0.1320349617 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010810_060 0.1351125957 - - sterol desaturase, putative [Ricinus communis]
16 Hb_003058_170 0.1365807598 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
17 Hb_002572_040 0.1372563563 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
18 Hb_000031_180 0.1396983033 - - sarcosine oxidase, putative [Ricinus communis]
19 Hb_016093_030 0.1397449277 - - ankyrin repeat protein [Bruguiera gymnorhiza]
20 Hb_001999_070 0.1398297644 - - PREDICTED: ammonium transporter 1 member 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001538_080 Hb_001538_080 Hb_000103_130 Hb_000103_130 Hb_001538_080--Hb_000103_130 Hb_001210_060 Hb_001210_060 Hb_001538_080--Hb_001210_060 Hb_097335_010 Hb_097335_010 Hb_001538_080--Hb_097335_010 Hb_027472_060 Hb_027472_060 Hb_001538_080--Hb_027472_060 Hb_005730_060 Hb_005730_060 Hb_001538_080--Hb_005730_060 Hb_000235_040 Hb_000235_040 Hb_001538_080--Hb_000235_040 Hb_002613_040 Hb_002613_040 Hb_000103_130--Hb_002613_040 Hb_001699_080 Hb_001699_080 Hb_000103_130--Hb_001699_080 Hb_000103_130--Hb_001210_060 Hb_163950_050 Hb_163950_050 Hb_000103_130--Hb_163950_050 Hb_004032_190 Hb_004032_190 Hb_000103_130--Hb_004032_190 Hb_000847_030 Hb_000847_030 Hb_001210_060--Hb_000847_030 Hb_003018_150 Hb_003018_150 Hb_001210_060--Hb_003018_150 Hb_002246_030 Hb_002246_030 Hb_001210_060--Hb_002246_030 Hb_000329_440 Hb_000329_440 Hb_001210_060--Hb_000329_440 Hb_001210_060--Hb_027472_060 Hb_002724_010 Hb_002724_010 Hb_097335_010--Hb_002724_010 Hb_030827_010 Hb_030827_010 Hb_097335_010--Hb_030827_010 Hb_003145_010 Hb_003145_010 Hb_097335_010--Hb_003145_010 Hb_000977_020 Hb_000977_020 Hb_097335_010--Hb_000977_020 Hb_003835_080 Hb_003835_080 Hb_097335_010--Hb_003835_080 Hb_004032_280 Hb_004032_280 Hb_027472_060--Hb_004032_280 Hb_000031_180 Hb_000031_180 Hb_027472_060--Hb_000031_180 Hb_005842_010 Hb_005842_010 Hb_027472_060--Hb_005842_010 Hb_000329_780 Hb_000329_780 Hb_027472_060--Hb_000329_780 Hb_002572_040 Hb_002572_040 Hb_027472_060--Hb_002572_040 Hb_000599_150 Hb_000599_150 Hb_027472_060--Hb_000599_150 Hb_010810_060 Hb_010810_060 Hb_005730_060--Hb_010810_060 Hb_005730_060--Hb_027472_060 Hb_005730_060--Hb_003835_080 Hb_001159_230 Hb_001159_230 Hb_005730_060--Hb_001159_230 Hb_005730_060--Hb_000031_180 Hb_022693_010 Hb_022693_010 Hb_000235_040--Hb_022693_010 Hb_000235_040--Hb_001210_060 Hb_002025_070 Hb_002025_070 Hb_000235_040--Hb_002025_070 Hb_000076_060 Hb_000076_060 Hb_000235_040--Hb_000076_060 Hb_000235_040--Hb_027472_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0743158 0.608885 3.75196 6.80311 0.010279 0.0675025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0699956 0.128506 0.452191 0.942441 8.29513

CAGE analysis