Hb_001538_090

Information

Type -
Description -
Location Contig1538: 224565-226455
Sequence    

Annotation

kegg
ID egr:104418668
description 40S ribosomal protein S29
nr
ID XP_010099604.1
description 40S ribosomal protein S29 [Morus notabilis]
swissprot
ID Q680P8
description 40S ribosomal protein S29 OS=Arabidopsis thaliana GN=RPS29A PE=3 SV=2
trembl
ID W9RIN5
description 40S ribosomal protein S29 OS=Morus notabilis GN=L484_003677 PE=4 SV=1
Gene Ontology
ID GO:0005622
description 40s ribosomal protein s29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13237: 224624-226464
cDNA
(Sanger)
(ID:Location)		 001_E13.ab1: 224958-226464 , 004_N17.ab1: 224977-226463 , 005_A06.ab1: 224998-226466 , 008_K19.ab1: 224958-226464 , 013_I03.ab1: 224941-226466 , 017_A11.ab1: 224875-226463 , 035_J03.ab1: 224941-226466 , 038_G18.ab1: 224942-226459 , 047_D24.ab1: 224913-226466 , 047_E13.ab1: 224916-226464 , 048_N03.ab1: 224942-226464 , 051_D11.ab1: 224943-226464

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001538_090 0.0 - - 40S ribosomal protein S29 [Morus notabilis]
2 Hb_001369_640 0.087825601 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
3 Hb_001341_090 0.0938750475 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
4 Hb_134949_020 0.0956250516 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
5 Hb_003536_110 0.0956427326 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
6 Hb_002375_070 0.0977710816 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007113_070 0.0982118368 - - protein with unknown function [Ricinus communis]
8 Hb_002289_120 0.0985051018 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
9 Hb_000690_180 0.0989968589 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Jatropha curcas]
10 Hb_168054_010 0.0997235699 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
11 Hb_003943_130 0.099760265 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
12 Hb_005045_060 0.1011165534 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
13 Hb_001817_090 0.1017015938 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
14 Hb_000656_170 0.1018262555 - - lsm1, putative [Ricinus communis]
15 Hb_004306_020 0.1032671367 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
16 Hb_000152_420 0.1040055224 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
17 Hb_009265_070 0.1051607928 - - PREDICTED: uncharacterized protein LOC105649623 isoform X1 [Jatropha curcas]
18 Hb_003671_020 0.1082704703 - - calcineurin B, putative [Ricinus communis]
19 Hb_004108_070 0.110092392 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
20 Hb_004032_010 0.11087169 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]

Gene co-expression network

sample Hb_001538_090 Hb_001538_090 Hb_001369_640 Hb_001369_640 Hb_001538_090--Hb_001369_640 Hb_001341_090 Hb_001341_090 Hb_001538_090--Hb_001341_090 Hb_134949_020 Hb_134949_020 Hb_001538_090--Hb_134949_020 Hb_003536_110 Hb_003536_110 Hb_001538_090--Hb_003536_110 Hb_002375_070 Hb_002375_070 Hb_001538_090--Hb_002375_070 Hb_007113_070 Hb_007113_070 Hb_001538_090--Hb_007113_070 Hb_000152_420 Hb_000152_420 Hb_001369_640--Hb_000152_420 Hb_000690_180 Hb_000690_180 Hb_001369_640--Hb_000690_180 Hb_003943_130 Hb_003943_130 Hb_001369_640--Hb_003943_130 Hb_001314_100 Hb_001314_100 Hb_001369_640--Hb_001314_100 Hb_002289_120 Hb_002289_120 Hb_001369_640--Hb_002289_120 Hb_001369_640--Hb_134949_020 Hb_005045_060 Hb_005045_060 Hb_001341_090--Hb_005045_060 Hb_001341_090--Hb_134949_020 Hb_000996_140 Hb_000996_140 Hb_001341_090--Hb_000996_140 Hb_002864_050 Hb_002864_050 Hb_001341_090--Hb_002864_050 Hb_000527_060 Hb_000527_060 Hb_001341_090--Hb_000527_060 Hb_002343_060 Hb_002343_060 Hb_001341_090--Hb_002343_060 Hb_165132_010 Hb_165132_010 Hb_134949_020--Hb_165132_010 Hb_033594_110 Hb_033594_110 Hb_134949_020--Hb_033594_110 Hb_134949_020--Hb_000996_140 Hb_134949_020--Hb_002864_050 Hb_134949_020--Hb_001314_100 Hb_000473_020 Hb_000473_020 Hb_003536_110--Hb_000473_020 Hb_031089_040 Hb_031089_040 Hb_003536_110--Hb_031089_040 Hb_078185_010 Hb_078185_010 Hb_003536_110--Hb_078185_010 Hb_001699_040 Hb_001699_040 Hb_003536_110--Hb_001699_040 Hb_005867_020 Hb_005867_020 Hb_003536_110--Hb_005867_020 Hb_004108_070 Hb_004108_070 Hb_002375_070--Hb_004108_070 Hb_003671_020 Hb_003671_020 Hb_002375_070--Hb_003671_020 Hb_011344_210 Hb_011344_210 Hb_002375_070--Hb_011344_210 Hb_000692_220 Hb_000692_220 Hb_002375_070--Hb_000692_220 Hb_000331_200 Hb_000331_200 Hb_002375_070--Hb_000331_200 Hb_092337_010 Hb_092337_010 Hb_002375_070--Hb_092337_010 Hb_154948_040 Hb_154948_040 Hb_007113_070--Hb_154948_040 Hb_000002_380 Hb_000002_380 Hb_007113_070--Hb_000002_380 Hb_007113_070--Hb_003671_020 Hb_000403_060 Hb_000403_060 Hb_007113_070--Hb_000403_060 Hb_007113_070--Hb_005867_020 Hb_004889_020 Hb_004889_020 Hb_007113_070--Hb_004889_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
102.168 70.1191 106.122 164.889 81.4511 170.837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
145.301 275.337 137.113 41.6752 36.964

CAGE analysis