Hb_001538_100

Information

Type -
Description -
Location Contig1538: 229057-230424
Sequence    

Annotation

kegg
ID rcu:RCOM_0174810
description histone deacetylase hda2, putative
nr
ID XP_012093100.1
description PREDICTED: histone deacetylase 6 [Jatropha curcas]
swissprot
ID Q54QE6
description NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum GN=sir2A PE=2 SV=1
trembl
ID B9SNC7
description Histone deacetylase hda2, putative OS=Ricinus communis GN=RCOM_0174810 PE=4 SV=1
Gene Ontology
ID GO:0008270
description histone deacetylase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13239: 229130-233945
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001538_100 0.0 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
2 Hb_004109_020 0.0957501177 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
3 Hb_003376_130 0.0963699868 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
4 Hb_002540_030 0.096526062 - - hypothetical protein 32 [Hevea brasiliensis]
5 Hb_003086_100 0.0972064883 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
6 Hb_002107_120 0.0996956674 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
7 Hb_148930_010 0.1003261166 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
8 Hb_010710_020 0.1007829257 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
9 Hb_014720_080 0.1041980626 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
10 Hb_003680_070 0.1045923947 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
11 Hb_000865_070 0.1047115046 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
12 Hb_010172_070 0.1058729825 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
13 Hb_000333_090 0.1072492965 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
14 Hb_000329_330 0.1094532007 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
15 Hb_000922_100 0.1098973651 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
16 Hb_004242_080 0.1107278632 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
17 Hb_001832_120 0.1109375243 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
18 Hb_001722_100 0.1114327551 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010883_150 0.111865309 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
20 Hb_000815_260 0.1121551249 - - 50S ribosomal protein L32pA [Hevea brasiliensis]

Gene co-expression network

sample Hb_001538_100 Hb_001538_100 Hb_004109_020 Hb_004109_020 Hb_001538_100--Hb_004109_020 Hb_003376_130 Hb_003376_130 Hb_001538_100--Hb_003376_130 Hb_002540_030 Hb_002540_030 Hb_001538_100--Hb_002540_030 Hb_003086_100 Hb_003086_100 Hb_001538_100--Hb_003086_100 Hb_002107_120 Hb_002107_120 Hb_001538_100--Hb_002107_120 Hb_148930_010 Hb_148930_010 Hb_001538_100--Hb_148930_010 Hb_001300_270 Hb_001300_270 Hb_004109_020--Hb_001300_270 Hb_004724_160 Hb_004724_160 Hb_004109_020--Hb_004724_160 Hb_004005_010 Hb_004005_010 Hb_004109_020--Hb_004005_010 Hb_001268_140 Hb_001268_140 Hb_004109_020--Hb_001268_140 Hb_001248_080 Hb_001248_080 Hb_004109_020--Hb_001248_080 Hb_000329_330 Hb_000329_330 Hb_003376_130--Hb_000329_330 Hb_000212_260 Hb_000212_260 Hb_003376_130--Hb_000212_260 Hb_003376_130--Hb_148930_010 Hb_003376_130--Hb_003086_100 Hb_148200_010 Hb_148200_010 Hb_003376_130--Hb_148200_010 Hb_002571_020 Hb_002571_020 Hb_003376_130--Hb_002571_020 Hb_014720_080 Hb_014720_080 Hb_002540_030--Hb_014720_080 Hb_010172_070 Hb_010172_070 Hb_002540_030--Hb_010172_070 Hb_000922_270 Hb_000922_270 Hb_002540_030--Hb_000922_270 Hb_007666_020 Hb_007666_020 Hb_002540_030--Hb_007666_020 Hb_003893_090 Hb_003893_090 Hb_002540_030--Hb_003893_090 Hb_012265_010 Hb_012265_010 Hb_003086_100--Hb_012265_010 Hb_001433_050 Hb_001433_050 Hb_003086_100--Hb_001433_050 Hb_001383_060 Hb_001383_060 Hb_003086_100--Hb_001383_060 Hb_002311_320 Hb_002311_320 Hb_003086_100--Hb_002311_320 Hb_010883_150 Hb_010883_150 Hb_003086_100--Hb_010883_150 Hb_003053_030 Hb_003053_030 Hb_002107_120--Hb_003053_030 Hb_002107_120--Hb_148200_010 Hb_000193_200 Hb_000193_200 Hb_002107_120--Hb_000193_200 Hb_002107_120--Hb_003376_130 Hb_002107_120--Hb_001268_140 Hb_005211_190 Hb_005211_190 Hb_002107_120--Hb_005211_190 Hb_002835_320 Hb_002835_320 Hb_148930_010--Hb_002835_320 Hb_148930_010--Hb_001433_050 Hb_148930_010--Hb_001248_080 Hb_148930_010--Hb_148200_010 Hb_003398_120 Hb_003398_120 Hb_148930_010--Hb_003398_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7494 9.55622 3.99641 8.15067 16.2702 19.5547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.0716 55.6337 29.3191 21.7284 3.05993

CAGE analysis