Hb_001538_110

Information

Type -
Description -
Location Contig1538: 232580-234027
Sequence    

Annotation

kegg
ID ola:101163380
description histone deacetylase 6-like
nr
ID XP_011491417.1
description PREDICTED: histone deacetylase 6, partial [Oryzias latipes]
swissprot
ID Q9UBN7
description Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
trembl
ID T1JHE2
description Uncharacterized protein OS=Strigamia maritima PE=4 SV=1
Gene Ontology
ID GO:0008270
description histone deacetylase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13238: 232739-233944 , PASA_asmbl_13239: 229130-233945
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001538_110 0.0 - - PREDICTED: histone deacetylase 6, partial [Oryzias latipes]
2 Hb_089140_100 0.0823728701 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
3 Hb_002918_200 0.0847748231 - - -
4 Hb_000648_060 0.085849684 - - hypothetical protein POPTR_0019s10570g [Populus trichocarpa]
5 Hb_002716_070 0.0871396311 - - PREDICTED: protein ABIL2 [Jatropha curcas]
6 Hb_004837_140 0.0876703091 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
7 Hb_000008_250 0.0919283143 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000703_140 0.0921367553 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
9 Hb_004108_230 0.0923773014 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
10 Hb_003927_130 0.0927172203 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
11 Hb_000134_330 0.0937480178 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
12 Hb_010672_070 0.0971079809 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]
13 Hb_011465_040 0.0976289787 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
14 Hb_009404_020 0.0996562051 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000212_260 0.1002107165 - - acyl-carrier-protein [Triadica sebifera]
16 Hb_012338_010 0.1012613009 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000120_750 0.1029559643 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
18 Hb_001383_060 0.104627702 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
19 Hb_000170_010 0.1050554463 - - o-methyltransferase, putative [Ricinus communis]
20 Hb_002205_080 0.1055086998 - - 40S ribosomal protein S26, putative [Ricinus communis]

Gene co-expression network

sample Hb_001538_110 Hb_001538_110 Hb_089140_100 Hb_089140_100 Hb_001538_110--Hb_089140_100 Hb_002918_200 Hb_002918_200 Hb_001538_110--Hb_002918_200 Hb_000648_060 Hb_000648_060 Hb_001538_110--Hb_000648_060 Hb_002716_070 Hb_002716_070 Hb_001538_110--Hb_002716_070 Hb_004837_140 Hb_004837_140 Hb_001538_110--Hb_004837_140 Hb_000008_250 Hb_000008_250 Hb_001538_110--Hb_000008_250 Hb_007479_020 Hb_007479_020 Hb_089140_100--Hb_007479_020 Hb_003376_130 Hb_003376_130 Hb_089140_100--Hb_003376_130 Hb_000134_330 Hb_000134_330 Hb_089140_100--Hb_000134_330 Hb_001912_010 Hb_001912_010 Hb_089140_100--Hb_001912_010 Hb_000025_600 Hb_000025_600 Hb_089140_100--Hb_000025_600 Hb_002918_200--Hb_004837_140 Hb_004108_230 Hb_004108_230 Hb_002918_200--Hb_004108_230 Hb_000834_270 Hb_000834_270 Hb_002918_200--Hb_000834_270 Hb_003175_040 Hb_003175_040 Hb_002918_200--Hb_003175_040 Hb_000170_010 Hb_000170_010 Hb_002918_200--Hb_000170_010 Hb_002027_210 Hb_002027_210 Hb_002918_200--Hb_002027_210 Hb_000648_060--Hb_002918_200 Hb_000212_260 Hb_000212_260 Hb_000648_060--Hb_000212_260 Hb_000648_060--Hb_004108_230 Hb_000648_060--Hb_003175_040 Hb_003927_130 Hb_003927_130 Hb_000648_060--Hb_003927_130 Hb_002716_070--Hb_000170_010 Hb_002716_070--Hb_003175_040 Hb_002716_070--Hb_004837_140 Hb_002028_130 Hb_002028_130 Hb_002716_070--Hb_002028_130 Hb_001718_100 Hb_001718_100 Hb_002716_070--Hb_001718_100 Hb_000205_270 Hb_000205_270 Hb_002716_070--Hb_000205_270 Hb_004837_140--Hb_000170_010 Hb_002963_010 Hb_002963_010 Hb_004837_140--Hb_002963_010 Hb_004837_140--Hb_004108_230 Hb_005997_010 Hb_005997_010 Hb_004837_140--Hb_005997_010 Hb_012338_010 Hb_012338_010 Hb_004837_140--Hb_012338_010 Hb_000436_050 Hb_000436_050 Hb_000008_250--Hb_000436_050 Hb_000291_210 Hb_000291_210 Hb_000008_250--Hb_000291_210 Hb_005955_020 Hb_005955_020 Hb_000008_250--Hb_005955_020 Hb_000402_200 Hb_000402_200 Hb_000008_250--Hb_000402_200 Hb_000634_100 Hb_000634_100 Hb_000008_250--Hb_000634_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.04 1.82266 4.44474 4.50974 16.4889 10.6497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1434 28.6373 19.2352 5.53716 4.58024

CAGE analysis