Hb_001538_120

Information

Type -
Description -
Location Contig1538: 235021-238583
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09340g
description POPTRDRAFT_804312; Erv1/Alr family protein
nr
ID XP_012093099.1
description PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
swissprot
ID Q8GXX0
description FAD-linked sulfhydryl oxidase ERV1 OS=Arabidopsis thaliana GN=ERV1 PE=1 SV=1
trembl
ID A0A067L7N3
description Sulfhydryl oxidase OS=Jatropha curcas GN=JCGZ_16309 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001538_120 0.0 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
2 Hb_003528_060 0.0639981832 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
3 Hb_000057_070 0.0664396906 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
4 Hb_000545_150 0.0720808653 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
5 Hb_012573_070 0.0744297444 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001818_020 0.0777081103 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
7 Hb_013405_090 0.0787059878 - - PREDICTED: uncharacterized protein LOC105648433 isoform X1 [Jatropha curcas]
8 Hb_003927_140 0.0797579762 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
9 Hb_012753_230 0.0801898912 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
10 Hb_002296_060 0.0841293114 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
11 Hb_010261_060 0.0872454029 - - unnamed protein product [Coffea canephora]
12 Hb_000926_300 0.0884294081 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
13 Hb_171900_050 0.0928109653 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004052_020 0.0962341346 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
15 Hb_002893_060 0.0964742863 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
16 Hb_175215_010 0.0971652159 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
17 Hb_000465_060 0.0972716068 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
18 Hb_182305_020 0.0976727976 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
19 Hb_003058_070 0.0979452478 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
20 Hb_002259_070 0.0982205925 - - taz protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001538_120 Hb_001538_120 Hb_003528_060 Hb_003528_060 Hb_001538_120--Hb_003528_060 Hb_000057_070 Hb_000057_070 Hb_001538_120--Hb_000057_070 Hb_000545_150 Hb_000545_150 Hb_001538_120--Hb_000545_150 Hb_012573_070 Hb_012573_070 Hb_001538_120--Hb_012573_070 Hb_001818_020 Hb_001818_020 Hb_001538_120--Hb_001818_020 Hb_013405_090 Hb_013405_090 Hb_001538_120--Hb_013405_090 Hb_003528_060--Hb_012573_070 Hb_003927_140 Hb_003927_140 Hb_003528_060--Hb_003927_140 Hb_003528_060--Hb_013405_090 Hb_182305_020 Hb_182305_020 Hb_003528_060--Hb_182305_020 Hb_003528_060--Hb_001818_020 Hb_000057_070--Hb_000545_150 Hb_000057_070--Hb_012573_070 Hb_004052_020 Hb_004052_020 Hb_000057_070--Hb_004052_020 Hb_000526_150 Hb_000526_150 Hb_000057_070--Hb_000526_150 Hb_012753_230 Hb_012753_230 Hb_000057_070--Hb_012753_230 Hb_000545_150--Hb_012573_070 Hb_000545_150--Hb_001818_020 Hb_000465_060 Hb_000465_060 Hb_000545_150--Hb_000465_060 Hb_000317_340 Hb_000317_340 Hb_000545_150--Hb_000317_340 Hb_032202_090 Hb_032202_090 Hb_000545_150--Hb_032202_090 Hb_001638_260 Hb_001638_260 Hb_000545_150--Hb_001638_260 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_000970_010 Hb_000970_010 Hb_001818_020--Hb_000970_010 Hb_001584_070 Hb_001584_070 Hb_001818_020--Hb_001584_070 Hb_000025_600 Hb_000025_600 Hb_001818_020--Hb_000025_600 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100 Hb_001818_020--Hb_001638_260 Hb_005322_040 Hb_005322_040 Hb_013405_090--Hb_005322_040 Hb_000012_220 Hb_000012_220 Hb_013405_090--Hb_000012_220 Hb_010261_060 Hb_010261_060 Hb_013405_090--Hb_010261_060 Hb_129924_010 Hb_129924_010 Hb_013405_090--Hb_129924_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.69079 1.33201 2.97407 1.50075 5.32554 5.63159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.3164 13.1236 3.46543 2.09215 1.34684

CAGE analysis