Hb_001538_140

Information

Type -
Description -
Location Contig1538: 245186-248723
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09380g
description POPTRDRAFT_202030; hypothetical protein
nr
ID XP_012093095.1
description PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
swissprot
ID Q54FR4
description PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1
trembl
ID A0A067L7S6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16305 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein sym1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13242: 245245-248705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001538_140 0.0 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
2 Hb_003147_050 0.0797086602 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000432_050 0.1068984699 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
4 Hb_002290_040 0.1163516735 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005614_050 0.1165931484 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
6 Hb_000363_200 0.1204118676 - - 40S ribosomal protein S8, putative [Ricinus communis]
7 Hb_002078_460 0.1210259355 - - -
8 Hb_002756_020 0.1299277844 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
9 Hb_000162_140 0.1306321533 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
10 Hb_007161_010 0.1338620631 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
11 Hb_005839_110 0.1364147341 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
12 Hb_001762_060 0.1371739847 - - pantothenate kinase, putative [Ricinus communis]
13 Hb_004324_050 0.1408144676 - - PREDICTED: spermine synthase [Jatropha curcas]
14 Hb_001278_050 0.1416427242 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
15 Hb_003929_120 0.1426378263 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
16 Hb_000562_040 0.1433313044 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
17 Hb_001959_160 0.1526778582 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
18 Hb_000976_360 0.1538735687 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
19 Hb_006816_450 0.1569258338 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001427_230 0.1570039385 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001538_140 Hb_001538_140 Hb_003147_050 Hb_003147_050 Hb_001538_140--Hb_003147_050 Hb_000432_050 Hb_000432_050 Hb_001538_140--Hb_000432_050 Hb_002290_040 Hb_002290_040 Hb_001538_140--Hb_002290_040 Hb_005614_050 Hb_005614_050 Hb_001538_140--Hb_005614_050 Hb_000363_200 Hb_000363_200 Hb_001538_140--Hb_000363_200 Hb_002078_460 Hb_002078_460 Hb_001538_140--Hb_002078_460 Hb_003147_050--Hb_002078_460 Hb_003147_050--Hb_002290_040 Hb_000162_140 Hb_000162_140 Hb_003147_050--Hb_000162_140 Hb_005839_110 Hb_005839_110 Hb_003147_050--Hb_005839_110 Hb_003929_120 Hb_003929_120 Hb_003147_050--Hb_003929_120 Hb_029510_040 Hb_029510_040 Hb_000432_050--Hb_029510_040 Hb_000432_050--Hb_005839_110 Hb_002756_020 Hb_002756_020 Hb_000432_050--Hb_002756_020 Hb_009314_010 Hb_009314_010 Hb_000432_050--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000432_050--Hb_000771_130 Hb_002290_040--Hb_002756_020 Hb_004429_070 Hb_004429_070 Hb_002290_040--Hb_004429_070 Hb_001959_160 Hb_001959_160 Hb_002290_040--Hb_001959_160 Hb_003943_030 Hb_003943_030 Hb_002290_040--Hb_003943_030 Hb_001153_220 Hb_001153_220 Hb_002290_040--Hb_001153_220 Hb_007161_010 Hb_007161_010 Hb_005614_050--Hb_007161_010 Hb_005614_050--Hb_002756_020 Hb_003551_050 Hb_003551_050 Hb_005614_050--Hb_003551_050 Hb_005614_050--Hb_000363_200 Hb_006594_020 Hb_006594_020 Hb_005614_050--Hb_006594_020 Hb_003226_280 Hb_003226_280 Hb_000363_200--Hb_003226_280 Hb_000865_070 Hb_000865_070 Hb_000363_200--Hb_000865_070 Hb_003097_210 Hb_003097_210 Hb_000363_200--Hb_003097_210 Hb_001545_060 Hb_001545_060 Hb_000363_200--Hb_001545_060 Hb_000363_200--Hb_002078_460 Hb_116898_010 Hb_116898_010 Hb_000363_200--Hb_116898_010 Hb_001616_060 Hb_001616_060 Hb_002078_460--Hb_001616_060 Hb_002028_130 Hb_002028_130 Hb_002078_460--Hb_002028_130 Hb_001278_050 Hb_001278_050 Hb_002078_460--Hb_001278_050 Hb_007382_150 Hb_007382_150 Hb_002078_460--Hb_007382_150 Hb_002078_460--Hb_000865_070 Hb_000032_220 Hb_000032_220 Hb_002078_460--Hb_000032_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.8069 5.39079 7.84775 6.21752 20.4662 38.0017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.4196 79.9865 136.962 45.5947 5.4356

CAGE analysis