Hb_001541_020

Information

Type -
Description -
Location Contig1541: 21749-25382
Sequence    

Annotation

kegg
ID rcu:RCOM_1083980
description Paramyosin, putative
nr
ID XP_012085502.1
description PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
swissprot
ID Q5XVA8
description Uncharacterized protein At3g49055 OS=Arabidopsis thaliana GN=At3g49055 PE=2 SV=1
trembl
ID A0A067JV23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17831 PE=4 SV=1
Gene Ontology
ID GO:0006486
description web family protein at1g12150-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13261: 21771-25140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_020 0.0 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
2 Hb_022408_010 0.045530538 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
3 Hb_000107_500 0.0531185355 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
4 Hb_002221_050 0.0603776739 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
5 Hb_000244_250 0.0606060969 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
6 Hb_004162_280 0.0607345417 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
7 Hb_002301_220 0.0659580609 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
8 Hb_001680_010 0.0684847183 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
9 Hb_006649_060 0.0693122078 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001797_050 0.0693463538 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
11 Hb_005532_050 0.0697059468 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
12 Hb_000424_010 0.0704854512 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
13 Hb_000320_200 0.0713755359 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
14 Hb_002255_050 0.0719393009 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_000529_260 0.0721981929 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
16 Hb_010222_080 0.0725834533 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
17 Hb_000002_040 0.073055716 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
18 Hb_004204_080 0.0739292249 - - diacylglycerol kinase, theta, putative [Ricinus communis]
19 Hb_175338_020 0.0744015909 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
20 Hb_000032_320 0.074557352 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001541_020 Hb_001541_020 Hb_022408_010 Hb_022408_010 Hb_001541_020--Hb_022408_010 Hb_000107_500 Hb_000107_500 Hb_001541_020--Hb_000107_500 Hb_002221_050 Hb_002221_050 Hb_001541_020--Hb_002221_050 Hb_000244_250 Hb_000244_250 Hb_001541_020--Hb_000244_250 Hb_004162_280 Hb_004162_280 Hb_001541_020--Hb_004162_280 Hb_002301_220 Hb_002301_220 Hb_001541_020--Hb_002301_220 Hb_022408_010--Hb_000244_250 Hb_002255_050 Hb_002255_050 Hb_022408_010--Hb_002255_050 Hb_022408_010--Hb_002221_050 Hb_000424_010 Hb_000424_010 Hb_022408_010--Hb_000424_010 Hb_022408_010--Hb_000107_500 Hb_000283_070 Hb_000283_070 Hb_000107_500--Hb_000283_070 Hb_006831_110 Hb_006831_110 Hb_000107_500--Hb_006831_110 Hb_000002_040 Hb_000002_040 Hb_000107_500--Hb_000002_040 Hb_000510_310 Hb_000510_310 Hb_000107_500--Hb_000510_310 Hb_000025_360 Hb_000025_360 Hb_000107_500--Hb_000025_360 Hb_000320_380 Hb_000320_380 Hb_002221_050--Hb_000320_380 Hb_002221_050--Hb_000424_010 Hb_007885_070 Hb_007885_070 Hb_002221_050--Hb_007885_070 Hb_000529_260 Hb_000529_260 Hb_002221_050--Hb_000529_260 Hb_000320_200 Hb_000320_200 Hb_002221_050--Hb_000320_200 Hb_015026_050 Hb_015026_050 Hb_002221_050--Hb_015026_050 Hb_000005_380 Hb_000005_380 Hb_000244_250--Hb_000005_380 Hb_000915_050 Hb_000915_050 Hb_000244_250--Hb_000915_050 Hb_007586_030 Hb_007586_030 Hb_000244_250--Hb_007586_030 Hb_003362_040 Hb_003362_040 Hb_000244_250--Hb_003362_040 Hb_144787_030 Hb_144787_030 Hb_004162_280--Hb_144787_030 Hb_175338_020 Hb_175338_020 Hb_004162_280--Hb_175338_020 Hb_000236_100 Hb_000236_100 Hb_004162_280--Hb_000236_100 Hb_004162_280--Hb_000510_310 Hb_000139_250 Hb_000139_250 Hb_004162_280--Hb_000139_250 Hb_003656_160 Hb_003656_160 Hb_002301_220--Hb_003656_160 Hb_008554_120 Hb_008554_120 Hb_002301_220--Hb_008554_120 Hb_000032_320 Hb_000032_320 Hb_002301_220--Hb_000032_320 Hb_001486_080 Hb_001486_080 Hb_002301_220--Hb_001486_080 Hb_002301_220--Hb_022408_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.2052 41.9046 19.0242 18.8892 70.1292 59.1454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.0772 27.1619 44.258 27.1457 21.9473

CAGE analysis