Hb_001541_070

Information

Type -
Description -
Location Contig1541: 70417-74735
Sequence    

Annotation

kegg
ID vvi:100262951
description protein-tyrosine-phosphatase MKP1-like
nr
ID XP_012085511.1
description PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
swissprot
ID Q9C5S1
description Protein-tyrosine-phosphatase MKP1 OS=Arabidopsis thaliana GN=MKP1 PE=1 SV=1
trembl
ID A0A067JV31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17836 PE=4 SV=1
Gene Ontology
ID GO:0003779
description protein-tyrosine-phosphatase mkp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13270: 70007-70183 , PASA_asmbl_13272: 73459-73832 , PASA_asmbl_13273: 72410-74712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_070 0.0 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
2 Hb_000270_120 0.0769570972 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
3 Hb_002542_110 0.0944050972 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
4 Hb_000008_440 0.0976880915 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
5 Hb_001405_070 0.1034457923 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
6 Hb_000086_630 0.1044947665 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
7 Hb_007810_010 0.108871241 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
8 Hb_000417_200 0.1138452054 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
9 Hb_002686_090 0.1152161132 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
10 Hb_001723_100 0.1162638437 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
11 Hb_001404_110 0.1177723389 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
12 Hb_000482_040 0.1188299647 - - Protein YME1, putative [Ricinus communis]
13 Hb_032717_060 0.1188556298 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
14 Hb_000170_130 0.1212961917 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
15 Hb_002157_080 0.1215123961 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
16 Hb_000120_640 0.1245820689 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_032202_040 0.1261724822 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
18 Hb_000640_040 0.1277020535 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
19 Hb_000094_070 0.1282586316 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
20 Hb_001105_110 0.1291784739 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001541_070 Hb_001541_070 Hb_000270_120 Hb_000270_120 Hb_001541_070--Hb_000270_120 Hb_002542_110 Hb_002542_110 Hb_001541_070--Hb_002542_110 Hb_000008_440 Hb_000008_440 Hb_001541_070--Hb_000008_440 Hb_001405_070 Hb_001405_070 Hb_001541_070--Hb_001405_070 Hb_000086_630 Hb_000086_630 Hb_001541_070--Hb_000086_630 Hb_007810_010 Hb_007810_010 Hb_001541_070--Hb_007810_010 Hb_000152_330 Hb_000152_330 Hb_000270_120--Hb_000152_330 Hb_001723_100 Hb_001723_100 Hb_000270_120--Hb_001723_100 Hb_000270_120--Hb_000086_630 Hb_000656_390 Hb_000656_390 Hb_000270_120--Hb_000656_390 Hb_000270_120--Hb_002542_110 Hb_000640_040 Hb_000640_040 Hb_002542_110--Hb_000640_040 Hb_010068_080 Hb_010068_080 Hb_002542_110--Hb_010068_080 Hb_001716_040 Hb_001716_040 Hb_002542_110--Hb_001716_040 Hb_002686_090 Hb_002686_090 Hb_002542_110--Hb_002686_090 Hb_002157_080 Hb_002157_080 Hb_002542_110--Hb_002157_080 Hb_001488_180 Hb_001488_180 Hb_002542_110--Hb_001488_180 Hb_032202_040 Hb_032202_040 Hb_000008_440--Hb_032202_040 Hb_001404_110 Hb_001404_110 Hb_000008_440--Hb_001404_110 Hb_003657_010 Hb_003657_010 Hb_000008_440--Hb_003657_010 Hb_000008_440--Hb_002542_110 Hb_000497_300 Hb_000497_300 Hb_000008_440--Hb_000497_300 Hb_000008_440--Hb_010068_080 Hb_000417_200 Hb_000417_200 Hb_001405_070--Hb_000417_200 Hb_011671_410 Hb_011671_410 Hb_001405_070--Hb_011671_410 Hb_012725_060 Hb_012725_060 Hb_001405_070--Hb_012725_060 Hb_000230_500 Hb_000230_500 Hb_001405_070--Hb_000230_500 Hb_001405_070--Hb_002542_110 Hb_000170_130 Hb_000170_130 Hb_001405_070--Hb_000170_130 Hb_001105_110 Hb_001105_110 Hb_000086_630--Hb_001105_110 Hb_001635_190 Hb_001635_190 Hb_000086_630--Hb_001635_190 Hb_158530_020 Hb_158530_020 Hb_000086_630--Hb_158530_020 Hb_000086_630--Hb_001716_040 Hb_000086_630--Hb_002542_110 Hb_002043_030 Hb_002043_030 Hb_007810_010--Hb_002043_030 Hb_004218_020 Hb_004218_020 Hb_007810_010--Hb_004218_020 Hb_007810_010--Hb_000008_440 Hb_007810_010--Hb_003657_010 Hb_000120_640 Hb_000120_640 Hb_007810_010--Hb_000120_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.76014 23.9123 14.5693 11.633 5.22203 5.36023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.111 11.4057 25.0888 11.4092 25.9516

CAGE analysis