Hb_001541_080

Information

Type -
Description -
Location Contig1541: 75447-81949
Sequence    

Annotation

kegg
ID rcu:RCOM_0794230
description hypothetical protein
nr
ID XP_002530050.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVN1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0794230 PE=4 SV=1
Gene Ontology
ID GO:0006325
description coilin isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13275: 75548-81831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001143_110 0.0730143286 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
3 Hb_000300_440 0.0749687254 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
4 Hb_003464_020 0.0765123294 - - srpk, putative [Ricinus communis]
5 Hb_000317_250 0.0781094035 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
6 Hb_001221_040 0.0818442368 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
7 Hb_001675_070 0.0827298656 - - eukaryotic translation elongation factor, putative [Ricinus communis]
8 Hb_033834_060 0.0838025221 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
9 Hb_001172_010 0.0904307733 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
10 Hb_021409_170 0.0908201508 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
11 Hb_000023_190 0.0920173136 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
12 Hb_002028_170 0.092654896 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
13 Hb_000181_250 0.0928652606 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
14 Hb_011716_020 0.0971451993 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
15 Hb_001621_130 0.0976398856 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
16 Hb_002078_100 0.0979894829 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
17 Hb_067345_010 0.0983818336 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
18 Hb_000343_030 0.0997336683 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
19 Hb_004429_100 0.0997891735 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
20 Hb_010381_060 0.1011737062 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_001541_080 Hb_001541_080 Hb_001143_110 Hb_001143_110 Hb_001541_080--Hb_001143_110 Hb_000300_440 Hb_000300_440 Hb_001541_080--Hb_000300_440 Hb_003464_020 Hb_003464_020 Hb_001541_080--Hb_003464_020 Hb_000317_250 Hb_000317_250 Hb_001541_080--Hb_000317_250 Hb_001221_040 Hb_001221_040 Hb_001541_080--Hb_001221_040 Hb_001675_070 Hb_001675_070 Hb_001541_080--Hb_001675_070 Hb_001143_110--Hb_003464_020 Hb_001143_110--Hb_001675_070 Hb_001143_110--Hb_000317_250 Hb_000023_190 Hb_000023_190 Hb_001143_110--Hb_000023_190 Hb_033834_060 Hb_033834_060 Hb_001143_110--Hb_033834_060 Hb_000109_100 Hb_000109_100 Hb_000300_440--Hb_000109_100 Hb_000343_030 Hb_000343_030 Hb_000300_440--Hb_000343_030 Hb_003952_150 Hb_003952_150 Hb_000300_440--Hb_003952_150 Hb_100215_010 Hb_100215_010 Hb_000300_440--Hb_100215_010 Hb_001172_010 Hb_001172_010 Hb_000300_440--Hb_001172_010 Hb_007307_020 Hb_007307_020 Hb_000300_440--Hb_007307_020 Hb_003464_020--Hb_000023_190 Hb_010381_060 Hb_010381_060 Hb_003464_020--Hb_010381_060 Hb_021409_170 Hb_021409_170 Hb_003464_020--Hb_021409_170 Hb_001488_410 Hb_001488_410 Hb_003464_020--Hb_001488_410 Hb_000567_050 Hb_000567_050 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060 Hb_000317_250--Hb_033834_060 Hb_000333_060 Hb_000333_060 Hb_000317_250--Hb_000333_060 Hb_004689_050 Hb_004689_050 Hb_000317_250--Hb_004689_050 Hb_000317_250--Hb_003464_020 Hb_001221_040--Hb_021409_170 Hb_026099_010 Hb_026099_010 Hb_001221_040--Hb_026099_010 Hb_004450_010 Hb_004450_010 Hb_001221_040--Hb_004450_010 Hb_002675_060 Hb_002675_060 Hb_001221_040--Hb_002675_060 Hb_024990_010 Hb_024990_010 Hb_001221_040--Hb_024990_010 Hb_000046_440 Hb_000046_440 Hb_001221_040--Hb_000046_440 Hb_000209_070 Hb_000209_070 Hb_001675_070--Hb_000209_070 Hb_001675_070--Hb_003464_020 Hb_011716_020 Hb_011716_020 Hb_001675_070--Hb_011716_020 Hb_000347_130 Hb_000347_130 Hb_001675_070--Hb_000347_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3909 10.1218 9.49466 9.72058 25.0747 30.5811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5117 6.58385 8.92338 26.2774 8.65173

CAGE analysis