Hb_001541_110

Information

Type -
Description -
Location Contig1541: 104236-105875
Sequence    

Annotation

kegg
ID rcu:RCOM_0794090
description Cysteine desulfuration protein sufE, putative
nr
ID XP_012085520.1
description PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9FXE3
description SufE-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=SUFE2 PE=2 SV=1
trembl
ID A0A067JV38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17841 PE=4 SV=1
Gene Ontology
ID GO:0005488
description quinolinate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13280: 104244-104638 , PASA_asmbl_13281: 105301-105769 , PASA_asmbl_13282: 104912-105769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_110 0.0 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_007451_040 0.0836206099 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
3 Hb_000003_780 0.0885279836 - - hexokinase [Manihot esculenta]
4 Hb_001587_180 0.091052899 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
5 Hb_000413_060 0.0925731131 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
6 Hb_001863_120 0.0928709615 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
7 Hb_000926_080 0.096725954 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
8 Hb_005946_040 0.0968289913 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
9 Hb_001900_140 0.1027830404 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
10 Hb_000905_120 0.1045818008 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
11 Hb_019053_060 0.1060931884 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
12 Hb_001329_090 0.10774377 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007558_090 0.1078003005 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_005162_110 0.1084065317 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
15 Hb_005332_080 0.1088841953 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
16 Hb_000163_100 0.1116896549 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
17 Hb_004129_090 0.1119622735 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
18 Hb_171554_010 0.1141458467 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
19 Hb_029351_010 0.1145039996 - - PREDICTED: HD domain-containing protein 2 isoform X1 [Jatropha curcas]
20 Hb_000122_190 0.1146676297 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001541_110 Hb_001541_110 Hb_007451_040 Hb_007451_040 Hb_001541_110--Hb_007451_040 Hb_000003_780 Hb_000003_780 Hb_001541_110--Hb_000003_780 Hb_001587_180 Hb_001587_180 Hb_001541_110--Hb_001587_180 Hb_000413_060 Hb_000413_060 Hb_001541_110--Hb_000413_060 Hb_001863_120 Hb_001863_120 Hb_001541_110--Hb_001863_120 Hb_000926_080 Hb_000926_080 Hb_001541_110--Hb_000926_080 Hb_007263_010 Hb_007263_010 Hb_007451_040--Hb_007263_010 Hb_004994_080 Hb_004994_080 Hb_007451_040--Hb_004994_080 Hb_000140_440 Hb_000140_440 Hb_007451_040--Hb_000140_440 Hb_006555_040 Hb_006555_040 Hb_007451_040--Hb_006555_040 Hb_005162_110 Hb_005162_110 Hb_007451_040--Hb_005162_110 Hb_002631_240 Hb_002631_240 Hb_000003_780--Hb_002631_240 Hb_005946_040 Hb_005946_040 Hb_000003_780--Hb_005946_040 Hb_002874_180 Hb_002874_180 Hb_000003_780--Hb_002874_180 Hb_007002_020 Hb_007002_020 Hb_000003_780--Hb_007002_020 Hb_001900_140 Hb_001900_140 Hb_000003_780--Hb_001900_140 Hb_000003_780--Hb_001587_180 Hb_001587_180--Hb_001900_140 Hb_001287_040 Hb_001287_040 Hb_001587_180--Hb_001287_040 Hb_001587_180--Hb_005946_040 Hb_001935_100 Hb_001935_100 Hb_001587_180--Hb_001935_100 Hb_000163_100 Hb_000163_100 Hb_000413_060--Hb_000163_100 Hb_003556_030 Hb_003556_030 Hb_000413_060--Hb_003556_030 Hb_000413_240 Hb_000413_240 Hb_000413_060--Hb_000413_240 Hb_000390_090 Hb_000390_090 Hb_000413_060--Hb_000390_090 Hb_011053_010 Hb_011053_010 Hb_000413_060--Hb_011053_010 Hb_019053_060 Hb_019053_060 Hb_001863_120--Hb_019053_060 Hb_027472_100 Hb_027472_100 Hb_001863_120--Hb_027472_100 Hb_001946_160 Hb_001946_160 Hb_001863_120--Hb_001946_160 Hb_009252_060 Hb_009252_060 Hb_001863_120--Hb_009252_060 Hb_025194_060 Hb_025194_060 Hb_001863_120--Hb_025194_060 Hb_000200_300 Hb_000200_300 Hb_000926_080--Hb_000200_300 Hb_003266_030 Hb_003266_030 Hb_000926_080--Hb_003266_030 Hb_000086_080 Hb_000086_080 Hb_000926_080--Hb_000086_080 Hb_004965_110 Hb_004965_110 Hb_000926_080--Hb_004965_110 Hb_006907_060 Hb_006907_060 Hb_000926_080--Hb_006907_060 Hb_027506_040 Hb_027506_040 Hb_000926_080--Hb_027506_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23552 0.670051 4.11783 1.25999 0.637099 0.743337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18778 1.73014 0.962086 0.693986 2.42527

CAGE analysis