Hb_001541_120

Information

Type -
Description -
Location Contig1541: 107362-115978
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05810g
description POPTRDRAFT_726204; eukaryotic translation initiation factor 4B family protein
nr
ID KDP26684.1
description hypothetical protein JCGZ_17842 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4H4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17842 PE=4 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 4b family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13283: 107361-115957 , PASA_asmbl_13284: 114387-114804
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_120 0.0 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
2 Hb_000928_070 0.0477656892 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
3 Hb_001766_050 0.0560931496 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29290 [Jatropha curcas]
4 Hb_006740_030 0.0653760166 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
5 Hb_000140_090 0.0677871356 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
6 Hb_008421_020 0.0702712609 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
7 Hb_003124_150 0.0802826189 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
8 Hb_000288_030 0.0806940572 - - PREDICTED: syntaxin-32 [Jatropha curcas]
9 Hb_000811_070 0.0808144404 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
10 Hb_008566_030 0.0824544075 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
11 Hb_005167_010 0.084106065 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
12 Hb_003878_090 0.0848059625 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
13 Hb_001514_120 0.0849094397 - - hypothetical protein VITISV_015004 [Vitis vinifera]
14 Hb_062226_060 0.0851224396 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
15 Hb_001818_100 0.0851573204 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
16 Hb_002799_070 0.0857667918 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
17 Hb_000733_180 0.0861955713 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
18 Hb_003360_040 0.088388629 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
19 Hb_003153_010 0.0886214584 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
20 Hb_001489_080 0.0889779042 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001541_120 Hb_001541_120 Hb_000928_070 Hb_000928_070 Hb_001541_120--Hb_000928_070 Hb_001766_050 Hb_001766_050 Hb_001541_120--Hb_001766_050 Hb_006740_030 Hb_006740_030 Hb_001541_120--Hb_006740_030 Hb_000140_090 Hb_000140_090 Hb_001541_120--Hb_000140_090 Hb_008421_020 Hb_008421_020 Hb_001541_120--Hb_008421_020 Hb_003124_150 Hb_003124_150 Hb_001541_120--Hb_003124_150 Hb_000288_030 Hb_000288_030 Hb_000928_070--Hb_000288_030 Hb_000856_010 Hb_000856_010 Hb_000928_070--Hb_000856_010 Hb_012022_040 Hb_012022_040 Hb_000928_070--Hb_012022_040 Hb_003582_060 Hb_003582_060 Hb_000928_070--Hb_003582_060 Hb_000928_070--Hb_000140_090 Hb_001766_050--Hb_008421_020 Hb_001766_050--Hb_000928_070 Hb_000130_220 Hb_000130_220 Hb_001766_050--Hb_000130_220 Hb_062226_060 Hb_062226_060 Hb_001766_050--Hb_062226_060 Hb_001662_130 Hb_001662_130 Hb_001766_050--Hb_001662_130 Hb_006740_030--Hb_000140_090 Hb_006740_030--Hb_000928_070 Hb_000811_070 Hb_000811_070 Hb_006740_030--Hb_000811_070 Hb_006740_030--Hb_008421_020 Hb_007533_040 Hb_007533_040 Hb_006740_030--Hb_007533_040 Hb_000140_090--Hb_007533_040 Hb_005016_040 Hb_005016_040 Hb_000140_090--Hb_005016_040 Hb_010578_080 Hb_010578_080 Hb_000140_090--Hb_010578_080 Hb_008421_020--Hb_000811_070 Hb_013405_020 Hb_013405_020 Hb_008421_020--Hb_013405_020 Hb_003153_010 Hb_003153_010 Hb_008421_020--Hb_003153_010 Hb_004108_160 Hb_004108_160 Hb_008421_020--Hb_004108_160 Hb_008421_020--Hb_005016_040 Hb_000310_020 Hb_000310_020 Hb_003124_150--Hb_000310_020 Hb_003124_150--Hb_000928_070 Hb_000505_130 Hb_000505_130 Hb_003124_150--Hb_000505_130 Hb_000729_030 Hb_000729_030 Hb_003124_150--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003124_150--Hb_000336_150 Hb_000580_020 Hb_000580_020 Hb_003124_150--Hb_000580_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.165 23.6119 34.4056 36.161 18.3657 18.1887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.0255 42.5445 44.8059 28.452 48.9166

CAGE analysis