Hb_001541_130

Information

Type -
Description -
Location Contig1541: 117421-124388
Sequence    

Annotation

kegg
ID vvi:100264440
description uncharacterized LOC100264440
nr
ID XP_010100370.1
description GDSL esterase/lipase [Morus notabilis]
swissprot
ID Q9LIN2
description GDSL esterase/lipase At3g26430 OS=Arabidopsis thaliana GN=At3g26430 PE=2 SV=1
trembl
ID W9S1G0
description GDSL esterase/lipase OS=Morus notabilis GN=L484_027680 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13285: 122450-124429
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_130 0.0 - - GDSL esterase/lipase [Morus notabilis]
2 Hb_001095_020 0.073989413 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
3 Hb_002572_040 0.0749262642 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
4 Hb_111985_100 0.0816371707 - - beta-galactosidase, putative [Ricinus communis]
5 Hb_002150_090 0.0850394536 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
6 Hb_007811_020 0.0913196322 - - PREDICTED: expansin-A6 [Jatropha curcas]
7 Hb_004435_020 0.0941073672 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
8 Hb_005976_110 0.0950475892 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
9 Hb_004696_010 0.0954835602 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
10 Hb_000417_210 0.0956698096 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_051663_010 0.0963283003 - - receptor-kinase, putative [Ricinus communis]
12 Hb_001674_010 0.0989195673 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
13 Hb_007163_100 0.0990467449 - - BnaC03g52280D [Brassica napus]
14 Hb_001516_010 0.0998186869 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
15 Hb_001159_230 0.1020646884 - - Kinesin heavy chain, putative [Ricinus communis]
16 Hb_085962_010 0.1024343158 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
17 Hb_006242_050 0.1028913907 - - Osmotin precursor, putative [Ricinus communis]
18 Hb_012484_050 0.1036909883 - - PREDICTED: kinesin KP1 [Jatropha curcas]
19 Hb_027506_030 0.1056223357 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
20 Hb_003835_080 0.1064201755 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001541_130 Hb_001541_130 Hb_001095_020 Hb_001095_020 Hb_001541_130--Hb_001095_020 Hb_002572_040 Hb_002572_040 Hb_001541_130--Hb_002572_040 Hb_111985_100 Hb_111985_100 Hb_001541_130--Hb_111985_100 Hb_002150_090 Hb_002150_090 Hb_001541_130--Hb_002150_090 Hb_007811_020 Hb_007811_020 Hb_001541_130--Hb_007811_020 Hb_004435_020 Hb_004435_020 Hb_001541_130--Hb_004435_020 Hb_001674_010 Hb_001674_010 Hb_001095_020--Hb_001674_010 Hb_001095_020--Hb_002150_090 Hb_000028_190 Hb_000028_190 Hb_001095_020--Hb_000028_190 Hb_001095_020--Hb_004435_020 Hb_007163_100 Hb_007163_100 Hb_001095_020--Hb_007163_100 Hb_002572_040--Hb_002150_090 Hb_006242_050 Hb_006242_050 Hb_002572_040--Hb_006242_050 Hb_000599_150 Hb_000599_150 Hb_002572_040--Hb_000599_150 Hb_027472_060 Hb_027472_060 Hb_002572_040--Hb_027472_060 Hb_002572_040--Hb_001095_020 Hb_001516_010 Hb_001516_010 Hb_111985_100--Hb_001516_010 Hb_051663_010 Hb_051663_010 Hb_111985_100--Hb_051663_010 Hb_032920_020 Hb_032920_020 Hb_111985_100--Hb_032920_020 Hb_111985_100--Hb_001095_020 Hb_111985_100--Hb_002150_090 Hb_002150_090--Hb_000028_190 Hb_002150_090--Hb_007163_100 Hb_008054_030 Hb_008054_030 Hb_002150_090--Hb_008054_030 Hb_002066_110 Hb_002066_110 Hb_002150_090--Hb_002066_110 Hb_002150_090--Hb_001674_010 Hb_007811_020--Hb_004435_020 Hb_001544_090 Hb_001544_090 Hb_007811_020--Hb_001544_090 Hb_007218_040 Hb_007218_040 Hb_007811_020--Hb_007218_040 Hb_000878_050 Hb_000878_050 Hb_007811_020--Hb_000878_050 Hb_000392_110 Hb_000392_110 Hb_007811_020--Hb_000392_110 Hb_004435_020--Hb_000878_050 Hb_005976_110 Hb_005976_110 Hb_004435_020--Hb_005976_110 Hb_010407_130 Hb_010407_130 Hb_004435_020--Hb_010407_130 Hb_000103_450 Hb_000103_450 Hb_004435_020--Hb_000103_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0367783 0.397054 4.60309 6.99244 0.0164475 0.015518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0293477 0.0558883 0.792771 5.26516

CAGE analysis