Hb_001541_140

Information

Type -
Description -
Location Contig1541: 127928-132809
Sequence    

Annotation

kegg
ID rcu:RCOM_0794030
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012085524.1
description PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
swissprot
ID Q9FXE4
description Probable protein phosphatase 2C 14 OS=Arabidopsis thaliana GN=At1g67820 PE=2 SV=2
trembl
ID B9SVM2
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0794030 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13287: 130070-132160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_140 0.0 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
2 Hb_012395_040 0.0627927626 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005618_070 0.0702298498 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
4 Hb_001279_110 0.0730650313 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
5 Hb_001998_180 0.0757423779 - - actin binding protein, putative [Ricinus communis]
6 Hb_080952_060 0.0758593994 - - PREDICTED: patellin-4 [Populus euphratica]
7 Hb_005288_090 0.0791995303 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
8 Hb_000340_550 0.0795326463 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
9 Hb_000116_050 0.0803987892 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
10 Hb_001969_120 0.0850016892 - - PREDICTED: plectin [Jatropha curcas]
11 Hb_000060_030 0.085994473 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
12 Hb_002928_150 0.0883322646 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
13 Hb_181744_010 0.0894039512 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
14 Hb_001257_070 0.0918956854 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
15 Hb_003776_050 0.0924763196 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
16 Hb_003777_260 0.0930039506 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
17 Hb_009113_060 0.094190064 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011849_010 0.096769626 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
19 Hb_119044_040 0.0979373393 - - cyclin B, putative [Ricinus communis]
20 Hb_005116_120 0.0987643007 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001541_140 Hb_001541_140 Hb_012395_040 Hb_012395_040 Hb_001541_140--Hb_012395_040 Hb_005618_070 Hb_005618_070 Hb_001541_140--Hb_005618_070 Hb_001279_110 Hb_001279_110 Hb_001541_140--Hb_001279_110 Hb_001998_180 Hb_001998_180 Hb_001541_140--Hb_001998_180 Hb_080952_060 Hb_080952_060 Hb_001541_140--Hb_080952_060 Hb_005288_090 Hb_005288_090 Hb_001541_140--Hb_005288_090 Hb_000116_050 Hb_000116_050 Hb_012395_040--Hb_000116_050 Hb_012395_040--Hb_001279_110 Hb_012395_040--Hb_005618_070 Hb_001257_070 Hb_001257_070 Hb_012395_040--Hb_001257_070 Hb_000060_030 Hb_000060_030 Hb_012395_040--Hb_000060_030 Hb_012395_040--Hb_005288_090 Hb_001969_120 Hb_001969_120 Hb_005618_070--Hb_001969_120 Hb_005618_070--Hb_001279_110 Hb_002928_150 Hb_002928_150 Hb_005618_070--Hb_002928_150 Hb_005618_070--Hb_005288_090 Hb_001279_110--Hb_000060_030 Hb_001279_110--Hb_000116_050 Hb_119044_040 Hb_119044_040 Hb_001279_110--Hb_119044_040 Hb_003776_050 Hb_003776_050 Hb_001279_110--Hb_003776_050 Hb_001279_110--Hb_002928_150 Hb_001998_180--Hb_000060_030 Hb_001998_180--Hb_080952_060 Hb_001998_180--Hb_000116_050 Hb_001998_180--Hb_001279_110 Hb_001998_180--Hb_003776_050 Hb_000085_360 Hb_000085_360 Hb_001998_180--Hb_000085_360 Hb_080952_060--Hb_003776_050 Hb_080952_060--Hb_119044_040 Hb_080952_060--Hb_000085_360 Hb_080952_060--Hb_001279_110 Hb_080952_060--Hb_000060_030 Hb_000340_550 Hb_000340_550 Hb_005288_090--Hb_000340_550 Hb_005288_090--Hb_001257_070 Hb_005288_090--Hb_000060_030 Hb_005288_090--Hb_000116_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0309792 0.0962556 8.24986 3.56502 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0757032 0 0 0.431909 0.758593

CAGE analysis