Hb_001541_190

Information

Type -
Description -
Location Contig1541: 152925-155452
Sequence    

Annotation

kegg
ID pop:POPTR_0008s19000g
description POPTRDRAFT_1085621; glycosyl transferase family 17 family protein
nr
ID XP_012085532.1
description PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
swissprot
ID Q02527
description Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat3 PE=1 SV=2
trembl
ID A0A067K4I6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17852 PE=4 SV=1
Gene Ontology
ID GO:0016020
description beta- -mannosyl-glycoprotein 4-beta-n-acetylglucosaminyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13292: 152920-155437
cDNA
(Sanger)
(ID:Location)		 042_O20.ab1: 155444-155875 , 044_D05.ab1: 155444-155875 , 048_C08.ab1: 155444-155875

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_190 0.0 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
2 Hb_000069_300 0.0991055313 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
3 Hb_001307_020 0.1096909856 - - electron carrier, putative [Ricinus communis]
4 Hb_003667_020 0.1120048924 - - conserved hypothetical protein 16 [Hevea brasiliensis]
5 Hb_000175_300 0.1267595565 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
6 Hb_001638_120 0.1387878885 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
7 Hb_004970_070 0.1393988102 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
8 Hb_004712_090 0.1412580555 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
9 Hb_006060_010 0.1449424445 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
10 Hb_001862_030 0.1458757068 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
11 Hb_000165_090 0.1475415693 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 2-like [Jatropha curcas]
12 Hb_002463_050 0.1489125999 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000905_100 0.1503911577 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
14 Hb_001862_050 0.1509349994 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
15 Hb_004046_060 0.1552646088 - - PREDICTED: protein CDI [Jatropha curcas]
16 Hb_001627_010 0.1558335534 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
17 Hb_004223_080 0.1558566086 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000134_260 0.1563583352 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
19 Hb_000020_080 0.1564402504 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
20 Hb_000260_610 0.1603426706 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]

Gene co-expression network

sample Hb_001541_190 Hb_001541_190 Hb_000069_300 Hb_000069_300 Hb_001541_190--Hb_000069_300 Hb_001307_020 Hb_001307_020 Hb_001541_190--Hb_001307_020 Hb_003667_020 Hb_003667_020 Hb_001541_190--Hb_003667_020 Hb_000175_300 Hb_000175_300 Hb_001541_190--Hb_000175_300 Hb_001638_120 Hb_001638_120 Hb_001541_190--Hb_001638_120 Hb_004970_070 Hb_004970_070 Hb_001541_190--Hb_004970_070 Hb_008511_040 Hb_008511_040 Hb_000069_300--Hb_008511_040 Hb_001862_050 Hb_001862_050 Hb_000069_300--Hb_001862_050 Hb_006133_020 Hb_006133_020 Hb_000069_300--Hb_006133_020 Hb_001141_050 Hb_001141_050 Hb_000069_300--Hb_001141_050 Hb_001922_110 Hb_001922_110 Hb_000069_300--Hb_001922_110 Hb_004223_080 Hb_004223_080 Hb_001307_020--Hb_004223_080 Hb_000027_160 Hb_000027_160 Hb_001307_020--Hb_000027_160 Hb_001828_110 Hb_001828_110 Hb_001307_020--Hb_001828_110 Hb_000905_100 Hb_000905_100 Hb_001307_020--Hb_000905_100 Hb_000809_130 Hb_000809_130 Hb_001307_020--Hb_000809_130 Hb_001862_030 Hb_001862_030 Hb_003667_020--Hb_001862_030 Hb_003667_020--Hb_001862_050 Hb_000165_090 Hb_000165_090 Hb_003667_020--Hb_000165_090 Hb_003667_020--Hb_000069_300 Hb_000260_610 Hb_000260_610 Hb_003667_020--Hb_000260_610 Hb_000175_300--Hb_000069_300 Hb_000190_220 Hb_000190_220 Hb_000175_300--Hb_000190_220 Hb_000175_300--Hb_001307_020 Hb_001633_160 Hb_001633_160 Hb_000175_300--Hb_001633_160 Hb_004679_040 Hb_004679_040 Hb_000175_300--Hb_004679_040 Hb_011918_030 Hb_011918_030 Hb_001638_120--Hb_011918_030 Hb_001638_120--Hb_004223_080 Hb_001025_140 Hb_001025_140 Hb_001638_120--Hb_001025_140 Hb_003688_220 Hb_003688_220 Hb_001638_120--Hb_003688_220 Hb_000134_260 Hb_000134_260 Hb_001638_120--Hb_000134_260 Hb_107078_010 Hb_107078_010 Hb_001638_120--Hb_107078_010 Hb_007904_290 Hb_007904_290 Hb_004970_070--Hb_007904_290 Hb_002048_100 Hb_002048_100 Hb_004970_070--Hb_002048_100 Hb_004712_090 Hb_004712_090 Hb_004970_070--Hb_004712_090 Hb_001040_060 Hb_001040_060 Hb_004970_070--Hb_001040_060 Hb_004970_070--Hb_000134_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.92127 28.3819 79.9863 45.4537 1.17908 2.15881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.76328 2.45446 2.85957 3.94679 12.3828

CAGE analysis