Hb_001541_230

Information

Type -
Description -
Location Contig1541: 217338-225808
Sequence    

Annotation

kegg
ID crb:CARUB_v10020002mg
description hypothetical protein
nr
ID CBI26769.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9SQ64
description Non-functional NADPH-dependent codeinone reductase 2 OS=Papaver somniferum GN=COR2 PE=1 SV=1
trembl
ID R0IDZ9
description Uncharacterized protein OS=Capsella rubella GN=CARUB_v10020002mg PE=4 SV=1
Gene Ontology
ID GO:0016491
description non-functional nadph-dependent codeinone reductase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13297: 217247-219648 , PASA_asmbl_13298: 219728-221986 , PASA_asmbl_13300: 225629-227379
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_230 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_030385_010 0.0822644646 - - PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]
3 Hb_000000_270 0.084103267 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
4 Hb_000227_090 0.0852773093 - - PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Jatropha curcas]
5 Hb_006816_050 0.0853904536 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
6 Hb_005503_040 0.0873688287 - - PREDICTED: AMP deaminase [Jatropha curcas]
7 Hb_000011_190 0.0894006994 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]
8 Hb_000683_070 0.0911028222 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
9 Hb_164010_060 0.0939324196 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]
10 Hb_002255_030 0.0951019569 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
11 Hb_033834_030 0.0990459406 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
12 Hb_000982_060 0.1037644562 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
13 Hb_000291_060 0.1038961999 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
14 Hb_154114_010 0.1041181769 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
15 Hb_000574_540 0.1041993723 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000366_120 0.1048934658 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
17 Hb_063716_080 0.1050065107 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
18 Hb_004577_020 0.1051020791 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
19 Hb_002739_020 0.1052166499 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
20 Hb_000594_040 0.1059164431 - - hypothetical protein L484_013922 [Morus notabilis]

Gene co-expression network

sample Hb_001541_230 Hb_001541_230 Hb_030385_010 Hb_030385_010 Hb_001541_230--Hb_030385_010 Hb_000000_270 Hb_000000_270 Hb_001541_230--Hb_000000_270 Hb_000227_090 Hb_000227_090 Hb_001541_230--Hb_000227_090 Hb_006816_050 Hb_006816_050 Hb_001541_230--Hb_006816_050 Hb_005503_040 Hb_005503_040 Hb_001541_230--Hb_005503_040 Hb_000011_190 Hb_000011_190 Hb_001541_230--Hb_000011_190 Hb_007086_010 Hb_007086_010 Hb_030385_010--Hb_007086_010 Hb_004577_020 Hb_004577_020 Hb_030385_010--Hb_004577_020 Hb_010417_080 Hb_010417_080 Hb_030385_010--Hb_010417_080 Hb_000207_120 Hb_000207_120 Hb_030385_010--Hb_000207_120 Hb_106724_020 Hb_106724_020 Hb_030385_010--Hb_106724_020 Hb_000366_120 Hb_000366_120 Hb_000000_270--Hb_000366_120 Hb_000982_060 Hb_000982_060 Hb_000000_270--Hb_000982_060 Hb_000562_090 Hb_000562_090 Hb_000000_270--Hb_000562_090 Hb_028962_020 Hb_028962_020 Hb_000000_270--Hb_028962_020 Hb_000886_050 Hb_000886_050 Hb_000000_270--Hb_000886_050 Hb_000130_410 Hb_000130_410 Hb_000227_090--Hb_000130_410 Hb_000120_170 Hb_000120_170 Hb_000227_090--Hb_000120_170 Hb_000227_090--Hb_000000_270 Hb_002217_510 Hb_002217_510 Hb_000227_090--Hb_002217_510 Hb_154114_010 Hb_154114_010 Hb_000227_090--Hb_154114_010 Hb_000291_060 Hb_000291_060 Hb_006816_050--Hb_000291_060 Hb_003680_230 Hb_003680_230 Hb_006816_050--Hb_003680_230 Hb_007558_120 Hb_007558_120 Hb_006816_050--Hb_007558_120 Hb_001143_180 Hb_001143_180 Hb_006816_050--Hb_001143_180 Hb_006816_050--Hb_154114_010 Hb_131646_010 Hb_131646_010 Hb_006816_050--Hb_131646_010 Hb_080313_010 Hb_080313_010 Hb_005503_040--Hb_080313_010 Hb_000683_070 Hb_000683_070 Hb_005503_040--Hb_000683_070 Hb_004668_060 Hb_004668_060 Hb_005503_040--Hb_004668_060 Hb_000617_100 Hb_000617_100 Hb_005503_040--Hb_000617_100 Hb_007508_080 Hb_007508_080 Hb_005503_040--Hb_007508_080 Hb_100215_010 Hb_100215_010 Hb_005503_040--Hb_100215_010 Hb_000011_190--Hb_005503_040 Hb_000011_190--Hb_004668_060 Hb_000011_190--Hb_000982_060 Hb_000011_190--Hb_007508_080 Hb_005000_320 Hb_005000_320 Hb_000011_190--Hb_005000_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.771 50.1576 26.3496 42.3682 51.3892 45.3672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.2876 28.7201 17.8978 32.8754 20.4456

CAGE analysis