Hb_001541_250

Information

Type -
Description -
Location Contig1541: 230665-236998
Sequence    

Annotation

kegg
ID rcu:RCOM_1194550
description hypothetical protein
nr
ID XP_012085490.1
description PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
swissprot
ID A7SBF0
description Integrator complex subunit 9 homolog OS=Nematostella vectensis GN=ints9 PE=3 SV=1
trembl
ID A0A067JRT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17824 PE=4 SV=1
Gene Ontology
ID GO:0032039
description integrator complex subunit 9 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13303: 230855-232276 , PASA_asmbl_13304: 230916-231240 , PASA_asmbl_13306: 232937-234100 , PASA_asmbl_13307: 234135-234424 , PASA_asmbl_13308: 234880-235526 , PASA_asmbl_13309: 235662-235843 , PASA_asmbl_13311: 236488-236740
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_250 0.0 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
2 Hb_007054_040 0.0505996354 - - PREDICTED: protein RST1 [Jatropha curcas]
3 Hb_001862_110 0.0629271478 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
4 Hb_001935_140 0.0633552127 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
5 Hb_002374_290 0.0648956627 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
6 Hb_009028_010 0.0745171158 - - PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
7 Hb_000809_170 0.0778536572 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
8 Hb_000862_040 0.0785000664 - - ara4-interacting protein, putative [Ricinus communis]
9 Hb_029977_040 0.0809538668 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]
10 Hb_000069_130 0.0823085968 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
11 Hb_004916_020 0.0873118204 - - PREDICTED: DNA ligase 4 [Jatropha curcas]
12 Hb_005542_140 0.0874386987 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
13 Hb_000402_230 0.0881880247 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
14 Hb_000373_100 0.0884408877 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
15 Hb_000105_040 0.0886994377 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
16 Hb_000169_170 0.0906375659 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
17 Hb_004785_030 0.0911672028 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
18 Hb_001545_150 0.0912338735 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
19 Hb_000720_150 0.0923007452 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
20 Hb_007426_060 0.0925002979 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001541_250 Hb_001541_250 Hb_007054_040 Hb_007054_040 Hb_001541_250--Hb_007054_040 Hb_001862_110 Hb_001862_110 Hb_001541_250--Hb_001862_110 Hb_001935_140 Hb_001935_140 Hb_001541_250--Hb_001935_140 Hb_002374_290 Hb_002374_290 Hb_001541_250--Hb_002374_290 Hb_009028_010 Hb_009028_010 Hb_001541_250--Hb_009028_010 Hb_000809_170 Hb_000809_170 Hb_001541_250--Hb_000809_170 Hb_007054_040--Hb_001862_110 Hb_000373_100 Hb_000373_100 Hb_007054_040--Hb_000373_100 Hb_007054_040--Hb_001935_140 Hb_005389_160 Hb_005389_160 Hb_007054_040--Hb_005389_160 Hb_000169_170 Hb_000169_170 Hb_007054_040--Hb_000169_170 Hb_009486_160 Hb_009486_160 Hb_001862_110--Hb_009486_160 Hb_001488_040 Hb_001488_040 Hb_001862_110--Hb_001488_040 Hb_000926_150 Hb_000926_150 Hb_001862_110--Hb_000926_150 Hb_002812_010 Hb_002812_010 Hb_001862_110--Hb_002812_010 Hb_000105_040 Hb_000105_040 Hb_001935_140--Hb_000105_040 Hb_000862_040 Hb_000862_040 Hb_001935_140--Hb_000862_040 Hb_003581_170 Hb_003581_170 Hb_001935_140--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_001935_140--Hb_005542_140 Hb_000069_130 Hb_000069_130 Hb_002374_290--Hb_000069_130 Hb_002542_130 Hb_002542_130 Hb_002374_290--Hb_002542_130 Hb_007426_060 Hb_007426_060 Hb_002374_290--Hb_007426_060 Hb_029977_040 Hb_029977_040 Hb_002374_290--Hb_029977_040 Hb_001534_210 Hb_001534_210 Hb_002374_290--Hb_001534_210 Hb_144744_010 Hb_144744_010 Hb_009028_010--Hb_144744_010 Hb_005188_040 Hb_005188_040 Hb_009028_010--Hb_005188_040 Hb_009028_010--Hb_001935_140 Hb_004785_030 Hb_004785_030 Hb_009028_010--Hb_004785_030 Hb_009028_010--Hb_007054_040 Hb_001545_150 Hb_001545_150 Hb_000809_170--Hb_001545_150 Hb_000402_230 Hb_000402_230 Hb_000809_170--Hb_000402_230 Hb_004553_030 Hb_004553_030 Hb_000809_170--Hb_004553_030 Hb_002768_050 Hb_002768_050 Hb_000809_170--Hb_002768_050 Hb_000949_020 Hb_000949_020 Hb_000809_170--Hb_000949_020 Hb_000720_150 Hb_000720_150 Hb_000809_170--Hb_000720_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.09547 11.0897 4.12656 4.43555 4.9843 3.72505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.84134 3.81721 2.31143 5.09607 3.9972

CAGE analysis