Hb_001541_270

Information

Type -
Description -
Location Contig1541: 247179-249015
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05640g
description POPTRDRAFT_230517; hypothetical protein
nr
ID XP_012085485.1
description PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JRS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17819 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13312: 245511-248964 , PASA_asmbl_13313: 245511-248969 , PASA_asmbl_13314: 247892-248964 , PASA_asmbl_13315: 248014-248702
cDNA
(Sanger)
(ID:Location)		 053_I07.ab1: 248445-248808

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_270 0.0 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
2 Hb_009615_150 0.1145368039 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
3 Hb_022092_120 0.1219539417 - - PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
4 Hb_005396_050 0.1247191117 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
5 Hb_000798_060 0.1337543953 transcription factor TF Family: PHD -
6 Hb_173953_010 0.1349341487 - - hypothetical protein RCOM_1267370 [Ricinus communis]
7 Hb_002745_010 0.1382720433 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
8 Hb_005928_110 0.1386317194 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
9 Hb_005551_060 0.1390271397 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
10 Hb_004324_340 0.1437160146 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000173_480 0.1447103472 - - PREDICTED: calcium-binding protein 39 [Jatropha curcas]
12 Hb_004242_060 0.1470238498 - - PREDICTED: nicotinamidase 2-like [Jatropha curcas]
13 Hb_000237_080 0.1500507377 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
14 Hb_021254_030 0.150268082 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
15 Hb_001220_030 0.151219351 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
16 Hb_146464_010 0.1526659507 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
17 Hb_001610_110 0.1529473154 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
18 Hb_004032_270 0.1533101036 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
19 Hb_008959_030 0.1535081168 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
20 Hb_001564_080 0.1538513672 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001541_270 Hb_001541_270 Hb_009615_150 Hb_009615_150 Hb_001541_270--Hb_009615_150 Hb_022092_120 Hb_022092_120 Hb_001541_270--Hb_022092_120 Hb_005396_050 Hb_005396_050 Hb_001541_270--Hb_005396_050 Hb_000798_060 Hb_000798_060 Hb_001541_270--Hb_000798_060 Hb_173953_010 Hb_173953_010 Hb_001541_270--Hb_173953_010 Hb_002745_010 Hb_002745_010 Hb_001541_270--Hb_002745_010 Hb_005928_110 Hb_005928_110 Hb_009615_150--Hb_005928_110 Hb_000445_180 Hb_000445_180 Hb_009615_150--Hb_000445_180 Hb_026198_050 Hb_026198_050 Hb_009615_150--Hb_026198_050 Hb_021254_030 Hb_021254_030 Hb_009615_150--Hb_021254_030 Hb_000109_160 Hb_000109_160 Hb_009615_150--Hb_000109_160 Hb_000621_080 Hb_000621_080 Hb_009615_150--Hb_000621_080 Hb_000221_210 Hb_000221_210 Hb_022092_120--Hb_000221_210 Hb_000395_080 Hb_000395_080 Hb_022092_120--Hb_000395_080 Hb_022092_120--Hb_005396_050 Hb_000005_330 Hb_000005_330 Hb_022092_120--Hb_000005_330 Hb_000237_080 Hb_000237_080 Hb_022092_120--Hb_000237_080 Hb_002137_020 Hb_002137_020 Hb_022092_120--Hb_002137_020 Hb_156850_030 Hb_156850_030 Hb_005396_050--Hb_156850_030 Hb_005396_050--Hb_000237_080 Hb_001220_030 Hb_001220_030 Hb_005396_050--Hb_001220_030 Hb_004785_060 Hb_004785_060 Hb_005396_050--Hb_004785_060 Hb_001318_030 Hb_001318_030 Hb_005396_050--Hb_001318_030 Hb_000976_150 Hb_000976_150 Hb_005396_050--Hb_000976_150 Hb_000920_040 Hb_000920_040 Hb_000798_060--Hb_000920_040 Hb_008725_250 Hb_008725_250 Hb_000798_060--Hb_008725_250 Hb_015941_030 Hb_015941_030 Hb_000798_060--Hb_015941_030 Hb_004055_010 Hb_004055_010 Hb_000798_060--Hb_004055_010 Hb_086063_010 Hb_086063_010 Hb_000798_060--Hb_086063_010 Hb_000032_620 Hb_000032_620 Hb_000798_060--Hb_000032_620 Hb_004324_340 Hb_004324_340 Hb_173953_010--Hb_004324_340 Hb_001610_110 Hb_001610_110 Hb_173953_010--Hb_001610_110 Hb_000342_110 Hb_000342_110 Hb_173953_010--Hb_000342_110 Hb_173953_010--Hb_009615_150 Hb_173953_010--Hb_000621_080 Hb_001720_010 Hb_001720_010 Hb_173953_010--Hb_001720_010 Hb_002745_010--Hb_001220_030 Hb_076693_020 Hb_076693_020 Hb_002745_010--Hb_076693_020 Hb_124677_060 Hb_124677_060 Hb_002745_010--Hb_124677_060 Hb_015026_070 Hb_015026_070 Hb_002745_010--Hb_015026_070 Hb_000140_070 Hb_000140_070 Hb_002745_010--Hb_000140_070 Hb_001348_150 Hb_001348_150 Hb_002745_010--Hb_001348_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
135.606 218.071 33.3383 40.9895 142.235 111.862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
252.776 120.809 82.5018 40.0281 16.8627

CAGE analysis