Hb_001541_280

Information

Type -
Description -
Location Contig1541: 266544-270254
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05630g
description POPTRDRAFT_230519; hypothetical protein
nr
ID AIY24428.1
description phosphate transporter [Manihot esculenta]
swissprot
ID Q38954
description Inorganic phosphate transporter 2-1, chloroplastic OS=Arabidopsis thaliana GN=PHT2-1 PE=1 SV=1
trembl
ID A0A0A1E5I0
description Phosphate transporter OS=Manihot esculenta GN=PT2 PE=2 SV=1
Gene Ontology
ID GO:0009941
description inorganic phosphate transporter 2- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13318: 266769-270175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_280 0.0 - - phosphate transporter [Manihot esculenta]
2 Hb_000270_640 0.0821011605 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
3 Hb_000847_030 0.0844630769 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
4 Hb_002814_010 0.0935809608 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
5 Hb_020141_030 0.1004823039 - - solanesyl diphosphate synthase, putative [Ricinus communis]
6 Hb_000140_460 0.101387918 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
7 Hb_000002_300 0.1024431526 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
8 Hb_006915_010 0.104354516 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_119600_030 0.1050434067 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
10 Hb_004979_070 0.1058152819 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
11 Hb_005694_120 0.1067784541 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
12 Hb_000679_320 0.1072076311 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
13 Hb_007904_110 0.107630732 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
14 Hb_000705_040 0.1086634301 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000618_110 0.111619446 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
16 Hb_002226_090 0.1118817256 - - Stachyose synthase precursor, putative [Ricinus communis]
17 Hb_016924_010 0.1125387082 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003018_150 0.1134184613 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
19 Hb_004934_130 0.1145815694 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
20 Hb_005305_070 0.1157574034 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]

Gene co-expression network

sample Hb_001541_280 Hb_001541_280 Hb_000270_640 Hb_000270_640 Hb_001541_280--Hb_000270_640 Hb_000847_030 Hb_000847_030 Hb_001541_280--Hb_000847_030 Hb_002814_010 Hb_002814_010 Hb_001541_280--Hb_002814_010 Hb_020141_030 Hb_020141_030 Hb_001541_280--Hb_020141_030 Hb_000140_460 Hb_000140_460 Hb_001541_280--Hb_000140_460 Hb_000002_300 Hb_000002_300 Hb_001541_280--Hb_000002_300 Hb_000705_040 Hb_000705_040 Hb_000270_640--Hb_000705_040 Hb_000968_010 Hb_000968_010 Hb_000270_640--Hb_000968_010 Hb_000373_010 Hb_000373_010 Hb_000270_640--Hb_000373_010 Hb_002636_070 Hb_002636_070 Hb_000270_640--Hb_002636_070 Hb_004979_070 Hb_004979_070 Hb_000270_640--Hb_004979_070 Hb_005694_120 Hb_005694_120 Hb_000847_030--Hb_005694_120 Hb_003018_150 Hb_003018_150 Hb_000847_030--Hb_003018_150 Hb_000618_110 Hb_000618_110 Hb_000847_030--Hb_000618_110 Hb_000984_160 Hb_000984_160 Hb_000847_030--Hb_000984_160 Hb_001946_120 Hb_001946_120 Hb_000847_030--Hb_001946_120 Hb_001210_060 Hb_001210_060 Hb_000847_030--Hb_001210_060 Hb_004934_130 Hb_004934_130 Hb_002814_010--Hb_004934_130 Hb_000679_320 Hb_000679_320 Hb_002814_010--Hb_000679_320 Hb_002814_010--Hb_020141_030 Hb_000208_270 Hb_000208_270 Hb_002814_010--Hb_000208_270 Hb_000359_160 Hb_000359_160 Hb_002814_010--Hb_000359_160 Hb_020141_030--Hb_000208_270 Hb_000787_210 Hb_000787_210 Hb_020141_030--Hb_000787_210 Hb_020141_030--Hb_003018_150 Hb_003058_170 Hb_003058_170 Hb_020141_030--Hb_003058_170 Hb_069696_020 Hb_069696_020 Hb_000140_460--Hb_069696_020 Hb_002073_150 Hb_002073_150 Hb_000140_460--Hb_002073_150 Hb_006970_030 Hb_006970_030 Hb_000140_460--Hb_006970_030 Hb_000140_460--Hb_000618_110 Hb_000140_460--Hb_000984_160 Hb_018591_020 Hb_018591_020 Hb_000140_460--Hb_018591_020 Hb_003141_060 Hb_003141_060 Hb_000002_300--Hb_003141_060 Hb_074548_010 Hb_074548_010 Hb_000002_300--Hb_074548_010 Hb_003605_060 Hb_003605_060 Hb_000002_300--Hb_003605_060 Hb_000948_120 Hb_000948_120 Hb_000002_300--Hb_000948_120 Hb_002636_030 Hb_002636_030 Hb_000002_300--Hb_002636_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.812527 12.2064 32.2125 26.3992 0.455408 0.281232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.946292 0.82381 0.481941 6.12699 85.8902

CAGE analysis