Hb_001542_010

Information

Type -
Description -
Location Contig1542: 63829-66540
Sequence    

Annotation

kegg
ID -
description -
nr
ID WP_042943005.1
description hypothetical protein, partial [Pseudomonas fluorescens]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001542_010 0.0 - - hypothetical protein, partial [Pseudomonas fluorescens]
2 Hb_002598_030 0.075707678 - - -
3 Hb_147604_010 0.086366098 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
4 Hb_002447_100 0.1350623648 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
5 Hb_149345_010 0.1399031293 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
6 Hb_001250_030 0.1428820528 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003311_020 0.1464028671 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003994_070 0.1554995103 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_001174_050 0.1568257586 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_093388_010 0.1620752859 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
11 Hb_000432_020 0.1670881433 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
12 Hb_032016_010 0.1716669426 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
13 Hb_155423_010 0.173044013 - - -
14 Hb_013420_070 0.1747012806 - - hypothetical protein EUGRSUZ_I01852 [Eucalyptus grandis]
15 Hb_009851_090 0.1764800069 - - Protein ABIL2, putative [Ricinus communis]
16 Hb_144838_010 0.1769345065 - - hypothetical protein JCGZ_08246 [Jatropha curcas]
17 Hb_007533_050 0.1771681085 - - -
18 Hb_001355_060 0.1775358243 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
19 Hb_003414_040 0.1775830569 - - hypothetical protein VITISV_016691 [Vitis vinifera]
20 Hb_000567_270 0.1881873979 - - hypothetical protein L484_017162 [Morus notabilis]

Gene co-expression network

sample Hb_001542_010 Hb_001542_010 Hb_002598_030 Hb_002598_030 Hb_001542_010--Hb_002598_030 Hb_147604_010 Hb_147604_010 Hb_001542_010--Hb_147604_010 Hb_002447_100 Hb_002447_100 Hb_001542_010--Hb_002447_100 Hb_149345_010 Hb_149345_010 Hb_001542_010--Hb_149345_010 Hb_001250_030 Hb_001250_030 Hb_001542_010--Hb_001250_030 Hb_003311_020 Hb_003311_020 Hb_001542_010--Hb_003311_020 Hb_002598_030--Hb_147604_010 Hb_144838_010 Hb_144838_010 Hb_002598_030--Hb_144838_010 Hb_002598_030--Hb_001250_030 Hb_000432_020 Hb_000432_020 Hb_002598_030--Hb_000432_020 Hb_008680_010 Hb_008680_010 Hb_002598_030--Hb_008680_010 Hb_147604_010--Hb_144838_010 Hb_147604_010--Hb_000432_020 Hb_147604_010--Hb_001250_030 Hb_004445_030 Hb_004445_030 Hb_147604_010--Hb_004445_030 Hb_155423_010 Hb_155423_010 Hb_002447_100--Hb_155423_010 Hb_007590_030 Hb_007590_030 Hb_002447_100--Hb_007590_030 Hb_112791_030 Hb_112791_030 Hb_002447_100--Hb_112791_030 Hb_145080_010 Hb_145080_010 Hb_002447_100--Hb_145080_010 Hb_011358_010 Hb_011358_010 Hb_002447_100--Hb_011358_010 Hb_001459_020 Hb_001459_020 Hb_149345_010--Hb_001459_020 Hb_093388_010 Hb_093388_010 Hb_149345_010--Hb_093388_010 Hb_016734_040 Hb_016734_040 Hb_149345_010--Hb_016734_040 Hb_029510_060 Hb_029510_060 Hb_149345_010--Hb_029510_060 Hb_172486_010 Hb_172486_010 Hb_149345_010--Hb_172486_010 Hb_001250_030--Hb_093388_010 Hb_001250_030--Hb_029510_060 Hb_023738_010 Hb_023738_010 Hb_001250_030--Hb_023738_010 Hb_001250_030--Hb_003311_020 Hb_003414_040 Hb_003414_040 Hb_001250_030--Hb_003414_040 Hb_001250_030--Hb_000432_020 Hb_003994_070 Hb_003994_070 Hb_003311_020--Hb_003994_070 Hb_000567_270 Hb_000567_270 Hb_003311_020--Hb_000567_270 Hb_032016_010 Hb_032016_010 Hb_003311_020--Hb_032016_010 Hb_009851_090 Hb_009851_090 Hb_003311_020--Hb_009851_090 Hb_007533_050 Hb_007533_050 Hb_003311_020--Hb_007533_050 Hb_003311_020--Hb_000432_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0101435 0 0.00787993 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00727629 0.0772232

CAGE analysis