Hb_001544_020

Information

Type -
Description -
Location Contig1544: 33088-35041
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001544_020 0.0 - - -
2 Hb_169488_010 0.1997319518 - - PREDICTED: choline monooxygenase, chloroplastic-like [Populus euphratica]
3 Hb_005222_010 0.2113194249 - - hypothetical protein MTR_1g033950 [Medicago truncatula]
4 Hb_003702_050 0.2158187507 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
5 Hb_001981_080 0.2200418646 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Musa acuminata subsp. malaccensis]
6 Hb_000931_030 0.2430531164 - - PREDICTED: uncharacterized protein LOC105130278 [Populus euphratica]
7 Hb_002365_010 0.2462588672 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
8 Hb_126398_010 0.2472210305 - - -
9 Hb_036285_010 0.2782129419 - - -
10 Hb_000003_690 0.2785822837 - - -
11 Hb_061581_010 0.2798087125 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
12 Hb_063511_010 0.2799898075 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
13 Hb_001951_280 0.2804573535 - - -
14 Hb_145827_010 0.2831774363 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
15 Hb_135403_010 0.2859952893 - - HEV1.1 [Hevea brasiliensis]
16 Hb_166548_010 0.2925544421 - - hypothetical protein JCGZ_09681 [Jatropha curcas]
17 Hb_002205_200 0.2935324381 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
18 Hb_168737_010 0.2984531838 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000316_090 0.2993930874 - - -
20 Hb_000025_100 0.3029713615 - - -

Gene co-expression network

sample Hb_001544_020 Hb_001544_020 Hb_169488_010 Hb_169488_010 Hb_001544_020--Hb_169488_010 Hb_005222_010 Hb_005222_010 Hb_001544_020--Hb_005222_010 Hb_003702_050 Hb_003702_050 Hb_001544_020--Hb_003702_050 Hb_001981_080 Hb_001981_080 Hb_001544_020--Hb_001981_080 Hb_000931_030 Hb_000931_030 Hb_001544_020--Hb_000931_030 Hb_002365_010 Hb_002365_010 Hb_001544_020--Hb_002365_010 Hb_169488_010--Hb_003702_050 Hb_001951_280 Hb_001951_280 Hb_169488_010--Hb_001951_280 Hb_063511_010 Hb_063511_010 Hb_169488_010--Hb_063511_010 Hb_015091_010 Hb_015091_010 Hb_169488_010--Hb_015091_010 Hb_000003_690 Hb_000003_690 Hb_169488_010--Hb_000003_690 Hb_005222_010--Hb_002365_010 Hb_005222_010--Hb_169488_010 Hb_075642_010 Hb_075642_010 Hb_005222_010--Hb_075642_010 Hb_005222_010--Hb_000003_690 Hb_003621_010 Hb_003621_010 Hb_005222_010--Hb_003621_010 Hb_003702_050--Hb_063511_010 Hb_003702_050--Hb_001951_280 Hb_003702_050--Hb_000003_690 Hb_126398_010 Hb_126398_010 Hb_003702_050--Hb_126398_010 Hb_003702_050--Hb_015091_010 Hb_001981_080--Hb_126398_010 Hb_145827_010 Hb_145827_010 Hb_001981_080--Hb_145827_010 Hb_036285_010 Hb_036285_010 Hb_001981_080--Hb_036285_010 Hb_001981_080--Hb_003702_050 Hb_001981_080--Hb_000003_690 Hb_000025_100 Hb_000025_100 Hb_000931_030--Hb_000025_100 Hb_114839_010 Hb_114839_010 Hb_000931_030--Hb_114839_010 Hb_141383_010 Hb_141383_010 Hb_000931_030--Hb_141383_010 Hb_171529_010 Hb_171529_010 Hb_000931_030--Hb_171529_010 Hb_126112_010 Hb_126112_010 Hb_000931_030--Hb_126112_010 Hb_000002_030 Hb_000002_030 Hb_002365_010--Hb_000002_030 Hb_002365_010--Hb_000003_690 Hb_000316_090 Hb_000316_090 Hb_002365_010--Hb_000316_090 Hb_034579_010 Hb_034579_010 Hb_002365_010--Hb_034579_010 Hb_002365_010--Hb_075642_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.385842 0.372898 0 0 0 6.7969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81217 1.07286 0 0 0

CAGE analysis