Hb_001544_030

Information

Type -
Description -
Location Contig1544: 49669-58779
Sequence    

Annotation

kegg
ID rcu:RCOM_0842430
description fyve finger-containing phosphoinositide kinase, fyv1, putative (EC:2.7.1.150)
nr
ID XP_012072202.1
description PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
swissprot
ID Q9SSJ8
description Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C OS=Arabidopsis thaliana GN=FAB1C PE=2 SV=1
trembl
ID A0A067KPH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04685 PE=4 SV=1
Gene Ontology
ID GO:0000285
description 1-phosphatidylinositol-3-phosphate 5-kinase fab1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13334: 49652-50129 , PASA_asmbl_13337: 50847-51353 , PASA_asmbl_13338: 51417-54268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001544_030 0.0 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
2 Hb_175557_010 0.1103499707 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
3 Hb_030565_030 0.1116822465 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
4 Hb_000008_440 0.1118114752 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
5 Hb_000367_260 0.1130487225 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
6 Hb_000147_040 0.1156995425 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
7 Hb_020805_130 0.1192903201 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_010344_050 0.1240527281 - - Adagio 1 -like protein [Gossypium arboreum]
9 Hb_000836_040 0.1246145508 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
10 Hb_001314_070 0.1280878588 - - conserved hypothetical protein [Ricinus communis]
11 Hb_032202_040 0.1295598425 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
12 Hb_005188_020 0.1296491763 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
13 Hb_086639_010 0.1297668592 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_002311_360 0.1309074846 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
15 Hb_001504_330 0.1311429156 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
16 Hb_004712_130 0.131158155 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
17 Hb_000592_020 0.1320477728 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
18 Hb_000230_500 0.1324287231 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
19 Hb_000393_020 0.1332749343 - - lipid binding protein, putative [Ricinus communis]
20 Hb_000913_020 0.1335642099 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001544_030 Hb_001544_030 Hb_175557_010 Hb_175557_010 Hb_001544_030--Hb_175557_010 Hb_030565_030 Hb_030565_030 Hb_001544_030--Hb_030565_030 Hb_000008_440 Hb_000008_440 Hb_001544_030--Hb_000008_440 Hb_000367_260 Hb_000367_260 Hb_001544_030--Hb_000367_260 Hb_000147_040 Hb_000147_040 Hb_001544_030--Hb_000147_040 Hb_020805_130 Hb_020805_130 Hb_001544_030--Hb_020805_130 Hb_000603_230 Hb_000603_230 Hb_175557_010--Hb_000603_230 Hb_010931_130 Hb_010931_130 Hb_175557_010--Hb_010931_130 Hb_002600_090 Hb_002600_090 Hb_175557_010--Hb_002600_090 Hb_000288_030 Hb_000288_030 Hb_175557_010--Hb_000288_030 Hb_000260_030 Hb_000260_030 Hb_175557_010--Hb_000260_030 Hb_001514_120 Hb_001514_120 Hb_175557_010--Hb_001514_120 Hb_005188_020 Hb_005188_020 Hb_030565_030--Hb_005188_020 Hb_000836_040 Hb_000836_040 Hb_030565_030--Hb_000836_040 Hb_030565_030--Hb_020805_130 Hb_000230_500 Hb_000230_500 Hb_030565_030--Hb_000230_500 Hb_001959_190 Hb_001959_190 Hb_030565_030--Hb_001959_190 Hb_009803_050 Hb_009803_050 Hb_030565_030--Hb_009803_050 Hb_032202_040 Hb_032202_040 Hb_000008_440--Hb_032202_040 Hb_001404_110 Hb_001404_110 Hb_000008_440--Hb_001404_110 Hb_003657_010 Hb_003657_010 Hb_000008_440--Hb_003657_010 Hb_002542_110 Hb_002542_110 Hb_000008_440--Hb_002542_110 Hb_000497_300 Hb_000497_300 Hb_000008_440--Hb_000497_300 Hb_010068_080 Hb_010068_080 Hb_000008_440--Hb_010068_080 Hb_001504_330 Hb_001504_330 Hb_000367_260--Hb_001504_330 Hb_000603_080 Hb_000603_080 Hb_000367_260--Hb_000603_080 Hb_031910_020 Hb_031910_020 Hb_000367_260--Hb_031910_020 Hb_000367_260--Hb_030565_030 Hb_006824_050 Hb_006824_050 Hb_000367_260--Hb_006824_050 Hb_000367_260--Hb_005188_020 Hb_010407_180 Hb_010407_180 Hb_000147_040--Hb_010407_180 Hb_002027_040 Hb_002027_040 Hb_000147_040--Hb_002027_040 Hb_065525_090 Hb_065525_090 Hb_000147_040--Hb_065525_090 Hb_000592_020 Hb_000592_020 Hb_000147_040--Hb_000592_020 Hb_019263_020 Hb_019263_020 Hb_000147_040--Hb_019263_020 Hb_000120_960 Hb_000120_960 Hb_000147_040--Hb_000120_960 Hb_020805_130--Hb_001959_190 Hb_001507_040 Hb_001507_040 Hb_020805_130--Hb_001507_040 Hb_020805_130--Hb_009803_050 Hb_003053_020 Hb_003053_020 Hb_020805_130--Hb_003053_020 Hb_020805_130--Hb_000603_080 Hb_020805_130--Hb_002027_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7843 8.40424 8.07071 8.89132 3.47921 3.89859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.35464 10.1162 20.607 6.76186 11.3679

CAGE analysis