Hb_001544_060

Information

Type transcription factor
Description TF Family: MYB
Location Contig1544: 99465-100878
Sequence    

Annotation

kegg
ID pop:POPTR_0010s12420g
description POPTRDRAFT_566512; hypothetical protein
nr
ID XP_012072198.1
description PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
swissprot
ID P81393
description Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1
trembl
ID A0A067L1R2
description MYB family protein OS=Jatropha curcas GN=JCGZ_04682 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription repressor myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13342: 99379-100887
cDNA
(Sanger)
(ID:Location)		 008_N18.ab1: 99878-100887 , 026_O17.ab1: 99830-100297

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001544_060 0.0 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
2 Hb_000252_240 0.0767245409 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
3 Hb_000445_310 0.0837306777 - - hypothetical protein B456_011G218000 [Gossypium raimondii]
4 Hb_003453_060 0.0931378148 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
5 Hb_001898_100 0.1005763045 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
6 Hb_003337_020 0.1036066222 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
7 Hb_001638_190 0.105842913 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
8 Hb_007254_010 0.1064792489 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
9 Hb_006789_030 0.1086280559 - - PREDICTED: wall-associated receptor kinase-like 22 [Prunus mume]
10 Hb_000692_060 0.1120892308 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_001958_030 0.1121462098 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
12 Hb_000188_070 0.1156513132 - - calcineurin-like phosphoesterase [Manihot esculenta]
13 Hb_000300_070 0.1182104795 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
14 Hb_002025_290 0.1225306125 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
15 Hb_000163_140 0.1235081218 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
16 Hb_033834_020 0.128734816 - - conserved hypothetical protein [Ricinus communis]
17 Hb_023904_010 0.131957611 - - -
18 Hb_063405_010 0.1380516463 - - PREDICTED: probable terpene synthase 3 [Jatropha curcas]
19 Hb_005575_010 0.1382338492 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
20 Hb_078582_010 0.1389799104 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]

Gene co-expression network

sample Hb_001544_060 Hb_001544_060 Hb_000252_240 Hb_000252_240 Hb_001544_060--Hb_000252_240 Hb_000445_310 Hb_000445_310 Hb_001544_060--Hb_000445_310 Hb_003453_060 Hb_003453_060 Hb_001544_060--Hb_003453_060 Hb_001898_100 Hb_001898_100 Hb_001544_060--Hb_001898_100 Hb_003337_020 Hb_003337_020 Hb_001544_060--Hb_003337_020 Hb_001638_190 Hb_001638_190 Hb_001544_060--Hb_001638_190 Hb_000300_070 Hb_000300_070 Hb_000252_240--Hb_000300_070 Hb_000252_240--Hb_003453_060 Hb_023904_010 Hb_023904_010 Hb_000252_240--Hb_023904_010 Hb_000252_240--Hb_000445_310 Hb_000252_240--Hb_001638_190 Hb_000163_140 Hb_000163_140 Hb_000445_310--Hb_000163_140 Hb_000445_310--Hb_000300_070 Hb_001958_030 Hb_001958_030 Hb_000445_310--Hb_001958_030 Hb_000188_070 Hb_000188_070 Hb_000445_310--Hb_000188_070 Hb_005575_010 Hb_005575_010 Hb_003453_060--Hb_005575_010 Hb_078582_010 Hb_078582_010 Hb_003453_060--Hb_078582_010 Hb_002025_290 Hb_002025_290 Hb_003453_060--Hb_002025_290 Hb_003043_130 Hb_003043_130 Hb_003453_060--Hb_003043_130 Hb_003119_130 Hb_003119_130 Hb_003453_060--Hb_003119_130 Hb_000212_270 Hb_000212_270 Hb_001898_100--Hb_000212_270 Hb_001898_100--Hb_003337_020 Hb_006789_030 Hb_006789_030 Hb_001898_100--Hb_006789_030 Hb_000175_200 Hb_000175_200 Hb_001898_100--Hb_000175_200 Hb_001266_130 Hb_001266_130 Hb_001898_100--Hb_001266_130 Hb_000265_170 Hb_000265_170 Hb_003337_020--Hb_000265_170 Hb_063405_010 Hb_063405_010 Hb_003337_020--Hb_063405_010 Hb_000697_020 Hb_000697_020 Hb_003337_020--Hb_000697_020 Hb_005888_050 Hb_005888_050 Hb_003337_020--Hb_005888_050 Hb_000345_400 Hb_000345_400 Hb_001638_190--Hb_000345_400 Hb_001638_190--Hb_000188_070 Hb_000692_060 Hb_000692_060 Hb_001638_190--Hb_000692_060 Hb_001638_190--Hb_001958_030 Hb_001655_080 Hb_001655_080 Hb_001638_190--Hb_001655_080 Hb_000358_160 Hb_000358_160 Hb_001638_190--Hb_000358_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 27.0095 154.598 19.5045 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 20.7987 79.2677

CAGE analysis