Hb_001544_080

Information

Type -
Description -
Location Contig1544: 122326-126941
Sequence    

Annotation

kegg
ID rcu:RCOM_1289050
description WD-repeat protein, putative
nr
ID XP_012085980.1
description PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
swissprot
ID P90587
description 66 kDa stress protein OS=Physarum polycephalum PE=2 SV=1
trembl
ID A0A067K1W7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22471 PE=4 SV=1
Gene Ontology
ID GO:0005829
description 66 kda stress

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13345: 123174-124216 , PASA_asmbl_13346: 124248-124564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001544_080 0.0 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
2 Hb_117895_010 0.1231981448 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
3 Hb_011716_110 0.1270185634 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
4 Hb_011310_200 0.1373577851 - - grr1, plant, putative [Ricinus communis]
5 Hb_000866_370 0.1595552331 - - synaptotagmin, putative [Ricinus communis]
6 Hb_009897_010 0.1623064035 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_029977_050 0.1651123348 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
8 Hb_002686_400 0.1652246997 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
9 Hb_089100_040 0.1677496223 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
10 Hb_000107_560 0.1684244407 - - glutamate receptor 3 plant, putative [Ricinus communis]
11 Hb_000022_180 0.1691916351 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
12 Hb_003525_020 0.170215707 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003155_020 0.1735202255 - - Rpp4C3 [Medicago truncatula]
14 Hb_000732_080 0.1766191961 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g45440 [Jatropha curcas]
15 Hb_000120_970 0.1767823141 - - PREDICTED: probable acyl-activating enzyme 2 isoform X2 [Jatropha curcas]
16 Hb_008226_100 0.1772045231 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
17 Hb_001251_060 0.1817063537 - - aldo/keto reductase AKR [Manihot esculenta]
18 Hb_000216_020 0.1820856779 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
19 Hb_034337_010 0.1826896649 - - vesicle-associated membrane protein, putative [Ricinus communis]
20 Hb_004108_170 0.1855148961 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001544_080 Hb_001544_080 Hb_117895_010 Hb_117895_010 Hb_001544_080--Hb_117895_010 Hb_011716_110 Hb_011716_110 Hb_001544_080--Hb_011716_110 Hb_011310_200 Hb_011310_200 Hb_001544_080--Hb_011310_200 Hb_000866_370 Hb_000866_370 Hb_001544_080--Hb_000866_370 Hb_009897_010 Hb_009897_010 Hb_001544_080--Hb_009897_010 Hb_029977_050 Hb_029977_050 Hb_001544_080--Hb_029977_050 Hb_117895_010--Hb_000866_370 Hb_117895_010--Hb_011310_200 Hb_004108_170 Hb_004108_170 Hb_117895_010--Hb_004108_170 Hb_002760_040 Hb_002760_040 Hb_117895_010--Hb_002760_040 Hb_003155_020 Hb_003155_020 Hb_117895_010--Hb_003155_020 Hb_004162_120 Hb_004162_120 Hb_011716_110--Hb_004162_120 Hb_065500_030 Hb_065500_030 Hb_011716_110--Hb_065500_030 Hb_011716_110--Hb_009897_010 Hb_000599_130 Hb_000599_130 Hb_011716_110--Hb_000599_130 Hb_080451_010 Hb_080451_010 Hb_011716_110--Hb_080451_010 Hb_001251_060 Hb_001251_060 Hb_011310_200--Hb_001251_060 Hb_057079_020 Hb_057079_020 Hb_011310_200--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_011310_200--Hb_001410_010 Hb_011310_200--Hb_000866_370 Hb_000216_020 Hb_000216_020 Hb_011310_200--Hb_000216_020 Hb_000010_350 Hb_000010_350 Hb_000866_370--Hb_000010_350 Hb_089100_040 Hb_089100_040 Hb_000866_370--Hb_089100_040 Hb_002233_020 Hb_002233_020 Hb_000866_370--Hb_002233_020 Hb_000645_240 Hb_000645_240 Hb_000866_370--Hb_000645_240 Hb_009897_010--Hb_003155_020 Hb_009897_010--Hb_065500_030 Hb_009897_010--Hb_004162_120 Hb_009897_010--Hb_089100_040 Hb_000751_140 Hb_000751_140 Hb_009897_010--Hb_000751_140 Hb_001278_040 Hb_001278_040 Hb_029977_050--Hb_001278_040 Hb_029977_050--Hb_080451_010 Hb_000120_970 Hb_000120_970 Hb_029977_050--Hb_000120_970 Hb_003371_230 Hb_003371_230 Hb_029977_050--Hb_003371_230 Hb_000787_190 Hb_000787_190 Hb_029977_050--Hb_000787_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.736991 6.31749 0.344595 2.34844 1.13729 1.2851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.158947 0.0938021 0.713588 2.84573 0.497174

CAGE analysis