Hb_001545_090

Information

Type -
Description -
Location Contig1545: 112534-112881
Sequence    

Annotation

kegg
ID brp:103874823
description uncharacterized LOC103874823
nr
ID XP_009151504.1
description PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
swissprot
ID -
description -
trembl
ID A0A0D3A5H9
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_090 0.0 - - PREDICTED: uncharacterized protein LOC103874823 [Brassica rapa]
2 Hb_000235_020 0.0039600453 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002909_030 0.0046565173 transcription factor TF Family: C2H2 hypothetical protein RCOM_1270600 [Ricinus communis]
4 Hb_001343_070 0.0048385357 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]
5 Hb_001973_020 0.0066765917 - - -
6 Hb_006277_040 0.0072329133 - - PREDICTED: sodium-dependent phosphate transporter 1-like [Jatropha curcas]
7 Hb_001660_110 0.0074566228 - - amino acid transporter, putative [Ricinus communis]
8 Hb_000733_140 0.0083516286 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
9 Hb_000853_320 0.0085089632 - - -
10 Hb_002292_060 0.0091337841 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
11 Hb_003841_010 0.0101541469 - - -
12 Hb_128935_010 0.01044507 - - E3 ubiquitin-protein ligase UPL5 [Glycine soja]
13 Hb_001689_060 0.01072392 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
14 Hb_002918_100 0.0147174089 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
15 Hb_000032_110 0.014836405 - - nadhp hc toxin reductase, putative [Ricinus communis]
16 Hb_023930_010 0.0166852215 - - hypothetical protein RCOM_0641040 [Ricinus communis]
17 Hb_001158_210 0.017500219 - - conserved hypothetical protein [Ricinus communis]
18 Hb_184500_020 0.0176715946 - - -
19 Hb_053709_020 0.0177734135 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_000039_130 0.0197329676 - - -

Gene co-expression network

sample Hb_001545_090 Hb_001545_090 Hb_000235_020 Hb_000235_020 Hb_001545_090--Hb_000235_020 Hb_002909_030 Hb_002909_030 Hb_001545_090--Hb_002909_030 Hb_001343_070 Hb_001343_070 Hb_001545_090--Hb_001343_070 Hb_001973_020 Hb_001973_020 Hb_001545_090--Hb_001973_020 Hb_006277_040 Hb_006277_040 Hb_001545_090--Hb_006277_040 Hb_001660_110 Hb_001660_110 Hb_001545_090--Hb_001660_110 Hb_000235_020--Hb_001973_020 Hb_000235_020--Hb_006277_040 Hb_000235_020--Hb_001660_110 Hb_000853_320 Hb_000853_320 Hb_000235_020--Hb_000853_320 Hb_002292_060 Hb_002292_060 Hb_000235_020--Hb_002292_060 Hb_002909_030--Hb_001343_070 Hb_000733_140 Hb_000733_140 Hb_002909_030--Hb_000733_140 Hb_001689_060 Hb_001689_060 Hb_002909_030--Hb_001689_060 Hb_002909_030--Hb_000235_020 Hb_002918_100 Hb_002918_100 Hb_002909_030--Hb_002918_100 Hb_001343_070--Hb_000733_140 Hb_001343_070--Hb_001689_060 Hb_001343_070--Hb_000235_020 Hb_001343_070--Hb_002918_100 Hb_001973_020--Hb_006277_040 Hb_001973_020--Hb_001660_110 Hb_001973_020--Hb_000853_320 Hb_001973_020--Hb_002292_060 Hb_003841_010 Hb_003841_010 Hb_001973_020--Hb_003841_010 Hb_006277_040--Hb_001660_110 Hb_006277_040--Hb_000853_320 Hb_006277_040--Hb_002292_060 Hb_006277_040--Hb_003841_010 Hb_128935_010 Hb_128935_010 Hb_006277_040--Hb_128935_010 Hb_001660_110--Hb_000853_320 Hb_001660_110--Hb_002292_060 Hb_001660_110--Hb_003841_010 Hb_001660_110--Hb_128935_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.193607 0.461011 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis