Hb_001545_100

Information

Type -
Description -
Location Contig1545: 116512-120820
Sequence    

Annotation

kegg
ID vvi:100242539
description probable F-actin-capping protein subunit beta
nr
ID XP_002265135.1
description PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
swissprot
ID Q9M9G7
description Probable F-actin-capping protein subunit beta OS=Arabidopsis thaliana GN=At1g71790 PE=1 SV=1
trembl
ID D7TFR9
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g01970 PE=4 SV=1
Gene Ontology
ID GO:0005737
description probable f-actin-capping protein subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13357: 118283-120033 , PASA_asmbl_13358: 118516-118650 , PASA_asmbl_13359: 116522-120812 , PASA_asmbl_13360: 116522-120812
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_100 0.0 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
2 Hb_003540_030 0.0805596137 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
3 Hb_000140_050 0.0807225093 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
4 Hb_001279_340 0.091517238 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
5 Hb_004225_080 0.0983821836 - - -
6 Hb_006831_120 0.1053694523 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
7 Hb_001946_330 0.1069820736 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
8 Hb_006711_060 0.1076966587 - - Tubulin beta-1 chain [Morus notabilis]
9 Hb_028872_080 0.1120517305 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
10 Hb_000853_190 0.1140179696 - - mitochondrial carrier protein, putative [Ricinus communis]
11 Hb_000120_960 0.1142849225 - - isocitrate dehydrogenase, putative [Ricinus communis]
12 Hb_001776_160 0.1191377239 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
13 Hb_012505_010 0.1201808755 - - mak, putative [Ricinus communis]
14 Hb_000046_100 0.1205392488 - - NADH dehydrogenase, putative [Ricinus communis]
15 Hb_001096_110 0.1206990618 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
16 Hb_019516_080 0.123430716 - - conserved hypothetical protein [Ricinus communis]
17 Hb_026889_030 0.1236100848 - - protein with unknown function [Ricinus communis]
18 Hb_007904_260 0.1237038649 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
19 Hb_003994_190 0.1248317558 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000103_320 0.1277699017 - - Stem-specific protein TSJT1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001545_100 Hb_001545_100 Hb_003540_030 Hb_003540_030 Hb_001545_100--Hb_003540_030 Hb_000140_050 Hb_000140_050 Hb_001545_100--Hb_000140_050 Hb_001279_340 Hb_001279_340 Hb_001545_100--Hb_001279_340 Hb_004225_080 Hb_004225_080 Hb_001545_100--Hb_004225_080 Hb_006831_120 Hb_006831_120 Hb_001545_100--Hb_006831_120 Hb_001946_330 Hb_001946_330 Hb_001545_100--Hb_001946_330 Hb_003540_030--Hb_000140_050 Hb_000120_960 Hb_000120_960 Hb_003540_030--Hb_000120_960 Hb_001776_160 Hb_001776_160 Hb_003540_030--Hb_001776_160 Hb_000436_130 Hb_000436_130 Hb_003540_030--Hb_000436_130 Hb_000086_280 Hb_000086_280 Hb_003540_030--Hb_000086_280 Hb_000140_050--Hb_006831_120 Hb_000140_050--Hb_001776_160 Hb_028872_080 Hb_028872_080 Hb_000140_050--Hb_028872_080 Hb_007904_260 Hb_007904_260 Hb_000140_050--Hb_007904_260 Hb_001279_340--Hb_006831_120 Hb_002660_070 Hb_002660_070 Hb_001279_340--Hb_002660_070 Hb_001279_340--Hb_000120_960 Hb_002284_200 Hb_002284_200 Hb_001279_340--Hb_002284_200 Hb_010407_180 Hb_010407_180 Hb_001279_340--Hb_010407_180 Hb_004225_080--Hb_000140_050 Hb_000258_330 Hb_000258_330 Hb_004225_080--Hb_000258_330 Hb_004225_080--Hb_003540_030 Hb_002871_190 Hb_002871_190 Hb_004225_080--Hb_002871_190 Hb_010883_050 Hb_010883_050 Hb_004225_080--Hb_010883_050 Hb_006831_120--Hb_001776_160 Hb_000103_320 Hb_000103_320 Hb_006831_120--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_006831_120--Hb_000638_250 Hb_000340_570 Hb_000340_570 Hb_006831_120--Hb_000340_570 Hb_006831_120--Hb_028872_080 Hb_000059_050 Hb_000059_050 Hb_001946_330--Hb_000059_050 Hb_000853_190 Hb_000853_190 Hb_001946_330--Hb_000853_190 Hb_003992_170 Hb_003992_170 Hb_001946_330--Hb_003992_170 Hb_001946_330--Hb_000436_130 Hb_009339_030 Hb_009339_030 Hb_001946_330--Hb_009339_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1744 3.1985 17.1524 15.8422 7.90395 9.62458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6226 28.7416 44.5795 7.5945 14.252

CAGE analysis