Hb_001545_120

Information

Type -
Description -
Location Contig1545: 149483-151201
Sequence    

Annotation

kegg
ID pop:POPTR_0005s22150g
description POPTRDRAFT_761111; pentatricopeptide repeat-containing family protein
nr
ID XP_012073986.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
swissprot
ID Q9FX24
description Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
trembl
ID A0A067KW75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08908 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13361: 149734-149991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_120 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
2 Hb_002044_080 0.0697180405 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
3 Hb_000808_230 0.0713754403 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
4 Hb_011673_030 0.0724749007 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
5 Hb_006502_090 0.0749525806 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
6 Hb_001776_140 0.0749735632 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_004600_040 0.0771995105 - - -
8 Hb_018838_030 0.0779542096 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002876_110 0.0781061497 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000373_280 0.0786802899 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
11 Hb_000120_790 0.0805621969 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
12 Hb_000123_260 0.0810254071 - - PREDICTED: protein gar2 [Jatropha curcas]
13 Hb_000107_620 0.0811221921 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
14 Hb_001258_040 0.0820088601 - - hypothetical protein JCGZ_12578 [Jatropha curcas]
15 Hb_000243_030 0.0827116898 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
16 Hb_044728_010 0.0847323425 - - -
17 Hb_003010_030 0.0849465349 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
18 Hb_000170_210 0.0849787273 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000635_250 0.0862058758 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
20 Hb_000538_200 0.0870777401 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]

Gene co-expression network

sample Hb_001545_120 Hb_001545_120 Hb_002044_080 Hb_002044_080 Hb_001545_120--Hb_002044_080 Hb_000808_230 Hb_000808_230 Hb_001545_120--Hb_000808_230 Hb_011673_030 Hb_011673_030 Hb_001545_120--Hb_011673_030 Hb_006502_090 Hb_006502_090 Hb_001545_120--Hb_006502_090 Hb_001776_140 Hb_001776_140 Hb_001545_120--Hb_001776_140 Hb_004600_040 Hb_004600_040 Hb_001545_120--Hb_004600_040 Hb_000056_200 Hb_000056_200 Hb_002044_080--Hb_000056_200 Hb_058999_020 Hb_058999_020 Hb_002044_080--Hb_058999_020 Hb_002044_080--Hb_006502_090 Hb_001242_060 Hb_001242_060 Hb_002044_080--Hb_001242_060 Hb_000120_790 Hb_000120_790 Hb_002044_080--Hb_000120_790 Hb_000085_050 Hb_000085_050 Hb_002044_080--Hb_000085_050 Hb_006400_060 Hb_006400_060 Hb_000808_230--Hb_006400_060 Hb_007426_030 Hb_007426_030 Hb_000808_230--Hb_007426_030 Hb_000796_220 Hb_000796_220 Hb_000808_230--Hb_000796_220 Hb_044728_010 Hb_044728_010 Hb_000808_230--Hb_044728_010 Hb_000170_210 Hb_000170_210 Hb_000808_230--Hb_000170_210 Hb_000815_210 Hb_000815_210 Hb_011673_030--Hb_000815_210 Hb_003464_060 Hb_003464_060 Hb_011673_030--Hb_003464_060 Hb_001006_140 Hb_001006_140 Hb_011673_030--Hb_001006_140 Hb_002783_260 Hb_002783_260 Hb_011673_030--Hb_002783_260 Hb_003406_010 Hb_003406_010 Hb_011673_030--Hb_003406_010 Hb_013607_030 Hb_013607_030 Hb_006502_090--Hb_013607_030 Hb_007632_030 Hb_007632_030 Hb_006502_090--Hb_007632_030 Hb_017904_010 Hb_017904_010 Hb_006502_090--Hb_017904_010 Hb_006502_090--Hb_000120_790 Hb_000428_050 Hb_000428_050 Hb_001776_140--Hb_000428_050 Hb_001776_140--Hb_000120_790 Hb_001675_180 Hb_001675_180 Hb_001776_140--Hb_001675_180 Hb_001776_140--Hb_044728_010 Hb_000243_030 Hb_000243_030 Hb_001776_140--Hb_000243_030 Hb_002876_110 Hb_002876_110 Hb_004600_040--Hb_002876_110 Hb_000538_200 Hb_000538_200 Hb_004600_040--Hb_000538_200 Hb_000123_260 Hb_000123_260 Hb_004600_040--Hb_000123_260 Hb_000421_260 Hb_000421_260 Hb_004600_040--Hb_000421_260 Hb_003097_150 Hb_003097_150 Hb_004600_040--Hb_003097_150 Hb_000317_020 Hb_000317_020 Hb_004600_040--Hb_000317_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22622 0.771807 0.514801 0.416411 1.4835 1.90377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14962 1.85106 1.31044 0.821422 1.0617

CAGE analysis