Hb_001545_140

Information

Type transcription factor
Description TF Family: NAC
Location Contig1545: 177650-180509
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005634
description nac domain isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13371: 179420-179863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_140 0.0 transcription factor TF Family: NAC -
2 Hb_008878_030 0.0716170323 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
3 Hb_004048_110 0.07977429 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
4 Hb_004837_140 0.0853969345 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
5 Hb_002097_110 0.0860314279 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_000189_620 0.0896545878 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
7 Hb_027472_180 0.0896678437 - - hypothetical protein L484_016229 [Morus notabilis]
8 Hb_002477_070 0.0912268588 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
9 Hb_002918_200 0.0915577054 - - -
10 Hb_000160_170 0.0927656474 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
11 Hb_000115_330 0.0932044453 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
12 Hb_000703_140 0.0945459637 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
13 Hb_011465_040 0.0951531518 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
14 Hb_012338_010 0.095404775 - - conserved hypothetical protein [Ricinus communis]
15 Hb_143766_050 0.0959436631 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
16 Hb_000832_140 0.0961763963 - - actin depolymerizing factor 4 [Hevea brasiliensis]
17 Hb_026527_030 0.0970906461 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
18 Hb_009486_130 0.0992882203 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
19 Hb_000170_010 0.0996695712 - - o-methyltransferase, putative [Ricinus communis]
20 Hb_002449_020 0.1000891615 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]

Gene co-expression network

sample Hb_001545_140 Hb_001545_140 Hb_008878_030 Hb_008878_030 Hb_001545_140--Hb_008878_030 Hb_004048_110 Hb_004048_110 Hb_001545_140--Hb_004048_110 Hb_004837_140 Hb_004837_140 Hb_001545_140--Hb_004837_140 Hb_002097_110 Hb_002097_110 Hb_001545_140--Hb_002097_110 Hb_000189_620 Hb_000189_620 Hb_001545_140--Hb_000189_620 Hb_027472_180 Hb_027472_180 Hb_001545_140--Hb_027472_180 Hb_000331_080 Hb_000331_080 Hb_008878_030--Hb_000331_080 Hb_003050_080 Hb_003050_080 Hb_008878_030--Hb_003050_080 Hb_002686_020 Hb_002686_020 Hb_008878_030--Hb_002686_020 Hb_000832_140 Hb_000832_140 Hb_008878_030--Hb_000832_140 Hb_008878_030--Hb_004048_110 Hb_008878_030--Hb_004837_140 Hb_153112_020 Hb_153112_020 Hb_004048_110--Hb_153112_020 Hb_001292_020 Hb_001292_020 Hb_004048_110--Hb_001292_020 Hb_002214_040 Hb_002214_040 Hb_004048_110--Hb_002214_040 Hb_012725_050 Hb_012725_050 Hb_004048_110--Hb_012725_050 Hb_000170_010 Hb_000170_010 Hb_004837_140--Hb_000170_010 Hb_002918_200 Hb_002918_200 Hb_004837_140--Hb_002918_200 Hb_002963_010 Hb_002963_010 Hb_004837_140--Hb_002963_010 Hb_004108_230 Hb_004108_230 Hb_004837_140--Hb_004108_230 Hb_005997_010 Hb_005997_010 Hb_004837_140--Hb_005997_010 Hb_012338_010 Hb_012338_010 Hb_004837_140--Hb_012338_010 Hb_004662_030 Hb_004662_030 Hb_002097_110--Hb_004662_030 Hb_015001_020 Hb_015001_020 Hb_002097_110--Hb_015001_020 Hb_007426_230 Hb_007426_230 Hb_002097_110--Hb_007426_230 Hb_009711_030 Hb_009711_030 Hb_002097_110--Hb_009711_030 Hb_002097_110--Hb_027472_180 Hb_001824_070 Hb_001824_070 Hb_002097_110--Hb_001824_070 Hb_000189_620--Hb_007426_230 Hb_000123_260 Hb_000123_260 Hb_000189_620--Hb_000123_260 Hb_002006_020 Hb_002006_020 Hb_000189_620--Hb_002006_020 Hb_001477_110 Hb_001477_110 Hb_000189_620--Hb_001477_110 Hb_000160_170 Hb_000160_170 Hb_000189_620--Hb_000160_170 Hb_002311_350 Hb_002311_350 Hb_000189_620--Hb_002311_350 Hb_000703_140 Hb_000703_140 Hb_027472_180--Hb_000703_140 Hb_000376_050 Hb_000376_050 Hb_027472_180--Hb_000376_050 Hb_027472_180--Hb_004662_030 Hb_007101_130 Hb_007101_130 Hb_027472_180--Hb_007101_130 Hb_027472_180--Hb_007426_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.25144 1.12907 1.41158 1.5822 6.73663 5.13615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.78207 9.97641 7.06257 3.68217 2.9276

CAGE analysis