Hb_001545_160

Information

Type transcription factor
Description TF Family: NAC
Location Contig1545: 190079-194557
Sequence    

Annotation

kegg
ID cit:102615208
description uncharacterized LOC102615208
nr
ID XP_006473159.1
description PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]
swissprot
ID A4FVP6
description NAC domain-containing protein 16 OS=Arabidopsis thaliana GN=NAC016 PE=2 SV=1
trembl
ID A0A0D2UUA3
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G260000 PE=4 SV=1
Gene Ontology
ID GO:0005634
description no apical meristem family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13372: 184900-189202 , PASA_asmbl_13374: 190255-194251 , PASA_asmbl_13375: 190258-194577 , PASA_asmbl_13376: 193392-193851
cDNA
(Sanger)
(ID:Location)		 045_E03.ab1: 190256-192026

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_160 0.0 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]
2 Hb_000340_570 0.0661853593 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
3 Hb_000327_060 0.0720301961 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
4 Hb_003502_060 0.078842602 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
5 Hb_158445_010 0.0821344052 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
6 Hb_002304_160 0.083870868 - - PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]
7 Hb_012423_030 0.0864812381 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_010098_050 0.0885086431 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
9 Hb_006420_080 0.0888558199 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_004899_370 0.0893175057 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
11 Hb_010883_050 0.0905437574 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
12 Hb_000175_030 0.093764204 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
13 Hb_002676_090 0.094115408 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
14 Hb_003151_040 0.0951920175 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
15 Hb_006153_110 0.0953348927 - - dimethylaniline monooxygenase, putative [Ricinus communis]
16 Hb_000336_150 0.0954143823 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
17 Hb_004143_150 0.0958998904 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
18 Hb_065525_090 0.0960173861 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
19 Hb_001222_080 0.0967474167 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
20 Hb_004324_090 0.0970533797 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001545_160 Hb_001545_160 Hb_000340_570 Hb_000340_570 Hb_001545_160--Hb_000340_570 Hb_000327_060 Hb_000327_060 Hb_001545_160--Hb_000327_060 Hb_003502_060 Hb_003502_060 Hb_001545_160--Hb_003502_060 Hb_158445_010 Hb_158445_010 Hb_001545_160--Hb_158445_010 Hb_002304_160 Hb_002304_160 Hb_001545_160--Hb_002304_160 Hb_012423_030 Hb_012423_030 Hb_001545_160--Hb_012423_030 Hb_006831_120 Hb_006831_120 Hb_000340_570--Hb_006831_120 Hb_010175_040 Hb_010175_040 Hb_000340_570--Hb_010175_040 Hb_004899_370 Hb_004899_370 Hb_000340_570--Hb_004899_370 Hb_000261_140 Hb_000261_140 Hb_000340_570--Hb_000261_140 Hb_000205_090 Hb_000205_090 Hb_000340_570--Hb_000205_090 Hb_000327_060--Hb_158445_010 Hb_004143_150 Hb_004143_150 Hb_000327_060--Hb_004143_150 Hb_005162_060 Hb_005162_060 Hb_000327_060--Hb_005162_060 Hb_002676_090 Hb_002676_090 Hb_000327_060--Hb_002676_090 Hb_000327_060--Hb_012423_030 Hb_000030_030 Hb_000030_030 Hb_003502_060--Hb_000030_030 Hb_008013_050 Hb_008013_050 Hb_003502_060--Hb_008013_050 Hb_002301_150 Hb_002301_150 Hb_003502_060--Hb_002301_150 Hb_089032_030 Hb_089032_030 Hb_003502_060--Hb_089032_030 Hb_003151_040 Hb_003151_040 Hb_003502_060--Hb_003151_040 Hb_015778_010 Hb_015778_010 Hb_003502_060--Hb_015778_010 Hb_004324_090 Hb_004324_090 Hb_158445_010--Hb_004324_090 Hb_158445_010--Hb_005162_060 Hb_158445_010--Hb_004143_150 Hb_000310_020 Hb_000310_020 Hb_158445_010--Hb_000310_020 Hb_163256_020 Hb_163256_020 Hb_158445_010--Hb_163256_020 Hb_000571_020 Hb_000571_020 Hb_002304_160--Hb_000571_020 Hb_001776_160 Hb_001776_160 Hb_002304_160--Hb_001776_160 Hb_002304_160--Hb_000340_570 Hb_002304_160--Hb_000327_060 Hb_027654_050 Hb_027654_050 Hb_002304_160--Hb_027654_050 Hb_000107_160 Hb_000107_160 Hb_012423_030--Hb_000107_160 Hb_008453_030 Hb_008453_030 Hb_012423_030--Hb_008453_030 Hb_004324_270 Hb_004324_270 Hb_012423_030--Hb_004324_270 Hb_029879_130 Hb_029879_130 Hb_012423_030--Hb_029879_130 Hb_012675_050 Hb_012675_050 Hb_012423_030--Hb_012675_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.671 30.7871 31.4987 34.0654 18.1279 23.8486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.3356 70.6641 54.9711 31.8964 38.9922

CAGE analysis