Hb_001545_210

Information

Type -
Description -
Location Contig1545: 258049-267200
Sequence    

Annotation

kegg
ID lmi:LMXM_23_1590
description oxidoreductase-like protein
nr
ID KDP34609.1
description hypothetical protein JCGZ_11132 [Jatropha curcas]
swissprot
ID D4GP29
description D-xylose 1-dehydrogenase (NADP(+)) 1 OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) GN=HVO_B0028 PE=1 SV=1
trembl
ID A0A067KS06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11132 PE=4 SV=1
Gene Ontology
ID GO:0016491
description uncharacterized oxidoreductase at4g09670

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13381: 266510-266660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_210 0.0 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
2 Hb_177179_010 0.1450289543 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
3 Hb_002289_130 0.2151474967 transcription factor TF Family: C2H2 arsenite inducuble RNA associated protein aip-1, putative [Ricinus communis]
4 Hb_001242_090 0.2343329206 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
5 Hb_002513_030 0.2383726923 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
6 Hb_054127_050 0.2481119502 - - PREDICTED: uncharacterized protein LOC105638784 isoform X1 [Jatropha curcas]
7 Hb_130194_010 0.2820753318 - - PREDICTED: uncharacterized protein LOC104115665 [Nicotiana tomentosiformis]
8 Hb_002733_030 0.2852629004 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
9 Hb_000276_050 0.2892889012 - - -
10 Hb_001523_020 0.2901413635 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
11 Hb_005532_010 0.2931731189 - - -
12 Hb_006280_010 0.2967247802 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
13 Hb_003881_050 0.2970954519 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
14 Hb_001106_050 0.2994705922 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_025457_010 0.3008849538 - - -
16 Hb_003688_170 0.3057868804 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
17 Hb_004724_230 0.3062816175 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
18 Hb_003002_030 0.3134602764 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_000296_060 0.3194446305 - - -
20 Hb_000422_120 0.319831828 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Jatropha curcas]

Gene co-expression network

sample Hb_001545_210 Hb_001545_210 Hb_177179_010 Hb_177179_010 Hb_001545_210--Hb_177179_010 Hb_002289_130 Hb_002289_130 Hb_001545_210--Hb_002289_130 Hb_001242_090 Hb_001242_090 Hb_001545_210--Hb_001242_090 Hb_002513_030 Hb_002513_030 Hb_001545_210--Hb_002513_030 Hb_054127_050 Hb_054127_050 Hb_001545_210--Hb_054127_050 Hb_130194_010 Hb_130194_010 Hb_001545_210--Hb_130194_010 Hb_177179_010--Hb_002513_030 Hb_177179_010--Hb_001242_090 Hb_003226_290 Hb_003226_290 Hb_177179_010--Hb_003226_290 Hb_006280_010 Hb_006280_010 Hb_177179_010--Hb_006280_010 Hb_004881_100 Hb_004881_100 Hb_177179_010--Hb_004881_100 Hb_000161_020 Hb_000161_020 Hb_002289_130--Hb_000161_020 Hb_002289_130--Hb_001242_090 Hb_002289_130--Hb_177179_010 Hb_001135_280 Hb_001135_280 Hb_002289_130--Hb_001135_280 Hb_003688_170 Hb_003688_170 Hb_002289_130--Hb_003688_170 Hb_003688_160 Hb_003688_160 Hb_001242_090--Hb_003688_160 Hb_073452_010 Hb_073452_010 Hb_001242_090--Hb_073452_010 Hb_003881_050 Hb_003881_050 Hb_001242_090--Hb_003881_050 Hb_000251_090 Hb_000251_090 Hb_001242_090--Hb_000251_090 Hb_052689_010 Hb_052689_010 Hb_001242_090--Hb_052689_010 Hb_001242_090--Hb_003688_170 Hb_004724_230 Hb_004724_230 Hb_002513_030--Hb_004724_230 Hb_002513_030--Hb_054127_050 Hb_001523_020 Hb_001523_020 Hb_002513_030--Hb_001523_020 Hb_004553_020 Hb_004553_020 Hb_002513_030--Hb_004553_020 Hb_001780_120 Hb_001780_120 Hb_002513_030--Hb_001780_120 Hb_054127_050--Hb_004724_230 Hb_054127_050--Hb_001523_020 Hb_000422_120 Hb_000422_120 Hb_054127_050--Hb_000422_120 Hb_001006_240 Hb_001006_240 Hb_054127_050--Hb_001006_240 Hb_054127_050--Hb_001242_090 Hb_130194_010--Hb_001523_020 Hb_000512_070 Hb_000512_070 Hb_130194_010--Hb_000512_070 Hb_037226_010 Hb_037226_010 Hb_130194_010--Hb_037226_010 Hb_130194_010--Hb_002513_030 Hb_032496_010 Hb_032496_010 Hb_130194_010--Hb_032496_010 Hb_036311_020 Hb_036311_020 Hb_130194_010--Hb_036311_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.15631 0.290172 0.0110875 0 2.34229 2.67418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 20.3292 4.96152 4.75962

CAGE analysis